» Sources and properties of all sequences for aspartokinase cohesion groups

Info: Wait for the page to finish loading, then click on a table header to sort column contents, right-click to (de)select displayed columns.

Info: Cohesion 'Group' 99 is comprised of orphan sequences.

Cohesion Group Gene Nbd Subhomology Group Domain Phylum Class Order Family Genus Genome Name Acronym IMG Taxon ID NCBI Taxon ID IMG ID SEED ID Strain-level Gene Neighborhood Lateral Gene Transfer? Locus Tag Fused Domains Ask CDD ACT CDD KFGG Motif KYGG Motif KIGG Motif PDB ID # of Ask's Hdh present? Threonine Deaminase Present? Citramalate Synthase Present? Hdh-thr Hdh-met Hdh-min Internal Start Trp number Protein length %Trp %Proteomic Trp p:P Trp ratio
1 α Eukaryota Fungi Ascomycota Pezizomycotina Eurotiomycetes Aspergillus Aspergillus fumigatus Af293 Afum_Aa 638208601 330879 638265513 - - No Afu5g05590   cd04247 cd04934/cd04919 1 0 0   1 Yes Yes No     638263406 absent 3 518 0.57 1.45 0.39
1 α Eukaryota Fungi Ascomycota Saccharomycetales Saccharomycetaceae Pichia Pichia stipitis CBS 6054 Psti_Aa 640281010 322104 640392646 - - No PICST_69242   cd04247 cd04934/cd04919 1 0 0   1 Yes Yes No     640389232 absent 2 536 0.37 1.02 0.36
1 α Eukaryota Fungi Ascomycota Saccharomycotina Saccharomycetes Saccharomyces Saccharomyces cerevisiae S288c Scer_Aa 638208609 559292 638210220 fig|4932.3.peg.2035   - No YER052C   cd04247 cd04934/cd04919 1 0 0   1 Yes Yes No     638211958 absent 2 527 0.37 1.03 0.36
1 α Eukaryota Fungi Basidiomycota Hymenomycetes Tremellaceae Cryptococcus Cryptococcus neoformans var. neoformans JEC21 Fneo_Aa 638208604 214684 638258689 - - No CNI02030   cd04247 cd04934/cd04919 0 1 0   1 Yes Yes No     638253362 absent 2 654 0.3 1.37 0.22
2 α Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Hyphomonas Hyphomonas neptunium ATCC 15444 Hnep_Aa 637000135 228405 638144206 fig|228405.5.peg.1588   - No HNE_1643   cd04248 cd04910/cd04915 0 0 1   2 Yes No No 638144870     absent 3 482 0.62 1.37 0.45
2 α Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Rhodobacteraceae Silicibacter Silicibacter sp. TM1040 SILI-1b 637000268 292414 638005851 fig|292414.1.peg.2281   - No TM1040_0554   cd04248 cd04910/cd04915 0 0 1   2 Yes Yes No 638007484     absent 2 478 0.41 1.36 0.3
2 α Bacteria Proteobacteria Alphaproteobacteria Rhodospirillales Acetobacteraceae Acidiphilium Acidiphilium cryptum JF-5 Acry_Ab 640427101 349163 640554942 fig|349163.4.peg.3469   - No Acry_3012   cd04248 cd04910/cd04915 0 0 1   2 Yes No No 640553214     absent 2 488 0.4 1.3 0.31
2 α Bacteria Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingopyxis Sphingopyxis alaskensis RB2256 Sala_Ab 637000271 317655 638011338 fig|317655.9.peg.2810   - No Sala_2953   cd04248 cd04910/cd04915 0 0 1   2 Yes No No 638009171     absent 3 480 0.62 1.46 0.42
2 α Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae Desulfococcus Desulfococcus oleovorans Hxd3 Dole_Ab 641228490 96561 641263556 fig|96561.3.peg.959   - No Dole_0959   cd04248 cd04910/cd04915 0 0 1   2 Yes No No 641262872     absent 6 470 1.27 1.15 1.1
2 α Bacteria Proteobacteria Deltaproteobacteria Desulfobacterales Desulfobulbaceae Desulfotalea Desulfotalea psychrophila LSv54 Dpsy_Aa 637000094 177439 637527702 fig|177439.1.peg.451   - No DP0451   cd04248 cd04910/cd04915 0 0 1   1 Yes Yes No 637529033     absent 1 468 0.21 1.02 0.21
2 α Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcacea Anaeromyxobacter Anaeromyxobacter dehalogenans 2CP-C Adeh_Ab 637000007 290397 637863352 fig|290397.13.peg.1809   - No Adeh_1815   cd04248 cd04910/cd04915 0 0 1   2 Yes No No 637863174 637862929 637865489 absent 2 494 0.4 1.28 0.31
2 α Bacteria Proteobacteria Gammaproteobacteria-upper Alteromonadales Alteromonadaceae Marinobacter Marinobacter aquaeolei VT8 Mhyd_Ab 639633037 351348 639810106 fig|351348.5.peg.499   - No Maqu_0149   cd04248 cd04910/cd04915 0 0 1   2 Yes Yes No 639812248     absent 3 485 0.61 1.42 0.43
2 α Bacteria Proteobacteria Gammaproteobacteria-upper Alteromonadales Alteromonadaceae Saccharophagus Saccharophagus degradans 2-40 Sdeg_Ab 637000249 203122 637920266 fig|203122.12.peg.1190   - No Sde_1192   cd04248 cd04910/cd04915 0 0 1   2 Yes Yes No 637920283     absent 2 477 0.41 1.35 0.3
2 α Bacteria Proteobacteria Gammaproteobacteria-upper Chromatiales Chromatiaceae Nitrosococcus Nitrosococcus oceani ATCC 19707 Noce_Ab 637000194 323261 637737534 fig|323261.3.peg.76   - No Noc_1029   cd04248 cd04910/cd04915 0 0 1   2 Yes Yes No 637738933     absent 3 480 0.62 1.48 0.42
2 α Bacteria Proteobacteria Gammaproteobacteria-upper Oceanospirillales Oceanospirillaceae Marinomonas Marinomonas sp. MWYL1 MARI_Ab 640753033 400668 640803501 fig|400668.6.peg.1181   - No Mmwyl1_1162   cd04248 cd04910/cd04915 0 0 1   2 Yes Yes No 640806148     absent 3 481 0.62 1.25 0.5
2 α Bacteria Proteobacteria Gammaproteobacteria-upper Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas stutzeri A1501 Pstu_Ab 640427133 379731 640486133 - - No PST_0177   cd04248 cd04910/cd04915 0 0 1   2 Yes Yes No 640487154     absent 2 476 0.42 1.43 0.29
2 α Bacteria Proteobacteria Gammaproteobacteria-upper Thiotrichales Piscirickettsiaceae Thiomicrospira Thiomicrospira crunogena XCL-2 Tcru_Ab 637000325 317025 637785232 fig|317025.3.peg.468   - No Tcr_0521   cd04248 cd04910/cd04915 0 0 1   2 Yes Yes No 637785983     absent 3 481 0.62 1.24 0.5
2 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Photobacterium Photobacterium profundum SS9 Ppro_Ba 637000206 298386 637589809/637589811 fig|298386.1.peg.1604   fig|314280.3.peg.2032, Photobacterium profundum 3TCK
No PBPRB1487/1489   cd04248 cd04910/cd04915 0 0 1   5 Yes Yes No       absent 2 332 0.6 1.28 0.47
2 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fa 637000333 243277 637050092 fig|243277.1.peg.3549   fig|345073.6.peg.359, Vibrio cholerae O395
fig|404974.3.peg.11, Vibrio cholerae AM-19226
fig|412966.3.peg.2266, Vibrio cholerae 1587
fig|88888881.3.peg.1365, Vibrio cholerae NRT36s
No VCA0822   cd04248 cd04910/cd04915 0 0 1   5 Yes Yes No       absent 3 474 0.63 1.32 0.48
2 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio fischeri ES114 Vfis_Ac 637000334 312309 637638477 fig|312309.3.peg.3741   fig|388396.7.peg.3767, Vibrio fischeri MJ11
No VFA1125   cd04248 cd04910/cd04915 0 0 1   5 Yes Yes No       absent 2 475 0.42 1.18 0.36
2 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus RIMD 2210633 Vpar_Ac 637000335 223926 637398698 fig|223926.1.peg.1719   fig|419109.12.peg.391, Vibrio parahaemolyticus AQ3810
No VP1719   cd04248 cd04910/cd04915 0 0 1   5 Yes Yes No       absent 2 474 0.42 1.23 0.34
3 α Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus clausii KSM-K16 Bcla_Ab 637000019 66692 637620119 fig|66692.3.peg.1711   - No ABC1763   cd04245 cd04911/cd04916 1 0 0   2 Yes Yes No 637621311 637619929 637618323 absent 0 452 0 1.09 0
3 α Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus halodurans C-125 Bhal-1_Ac 637000020 272558 637058202 fig|272558.1.peg.1500   - No BH1500   cd04245 cd04911/cd04916 1 0 0   3 Yes Yes No 637060139 637057951 637058439 absent 0 456 0 1.13 0
3 α Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus licheniformis ATCC 14580 (Goettingen) Blic_Ac 639279303 279010 639309654 fig|279010.5.peg.2450   - No BLi00462   cd04245 cd04911/cd04916 1 0 0   3 Yes Yes No 639312540     absent 0 453 0 1.02 0
3 α Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis 168 Bsub_Ac 637000022 224308 637030502 fig|224308.1.peg.380   - No BSU03790   cd04245 cd04911/cd04916 1 0 0   3 Yes Yes No 637033411     absent 0 454 0 1.03 0
3 α Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus kaustophilus HTA426 Gkau_Ab 637000118 235909 637600008 fig|235909.3.peg.3237   - No GK3195   cd04245 cd04911/cd04916 1 0 0   2 Yes Yes No 637599776     absent 1 458 0.21 1.29 0.16
3 α Bacteria Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Oceanobacillus iheyensis HTE831 Oihe_Ab 637000201 221109 637325517 fig|221109.1.peg.1871   - No OB1871   cd04245 cd04911/cd04916 1 0 0   2 Yes No No 637324081     absent 0 464 0 1.01 0
3 α Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria innocua Clip11262 Linn_Ac 637000152 272626 637225247 fig|272626.1.peg.2456   - No lin2473   cd04245 cd04911/cd04916 1 0 0   3 Yes Yes No 637225465     absent 0 453 0 0.94 0
3 α Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes 4b F2365 Lmon_Ac 637000154 265669 637166144 fig|265669.1.peg.2321   fig|169963.1.peg.2364, Listeria monocytogenes EGD-e
fig|267409.1.peg.1167, Listeria monocytogenes str. 1/2a F6854
fig|393117.3.peg.2606, Listeria monocytogenes FSL J1-194
fig|393121.3.peg.2605, Listeria monocytogenes FSL J2-071
fig|393123.3.peg.2334, Listeria monocytogenes FSL N1-017
fig|393124.3.peg.1966, Listeria monocytogenes FSL N3-165
fig|393128.3.peg.2377, Listeria monocytogenes F6900
fig|393130.3.peg.1478, Listeria monocytogenes J0161
fig|393131.3.peg.2281, Listeria monocytogenes J2818
fig|393133.3.peg.901, Listeria monocytogenes 10403S
fig|401650.3.peg.2414, Listeria monocytogenes Aureli 1997
No LMOf2365_2345   cd04245 cd04911/cd04916 1 0 0   3 Yes Yes No 637166319     absent 0 453 0 0.92 0
3 α Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria welshimeri sv 6b SLCC5334 Lwel_Ac 639633035 386043 639707265 fig|386043.6.peg.2260   - No lwe2323   cd04245 cd04911/cd04916 1 0 0   3 Yes Yes No 639707439     absent 0 453 0 0.92 0
3 α Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus aureus COL Saur_Ab 637000273 93062 637152113 fig|93062.4.peg.1448   fig|158878.1.peg.1327, Staphylococcus aureus subsp. aureus Mu50
fig|158879.1.peg.1203, Staphylococcus aureus subsp. aureus N315
fig|196620.1.peg.1214, Staphylococcus aureus subsp. aureus MW2
fig|282458.1.peg.1261, Staphylococcus aureus subsp. aureus MRSA252
fig|282458.1.peg.2690, Staphylococcus aureus subsp. aureus MRSA252
fig|282459.1.peg.1259, Staphylococcus aureus subsp. aureus MSSA476
fig|282459.1.peg.2608, Staphylococcus aureus subsp. aureus MSSA476
fig|359786.3.peg.1241, Staphylococcus aureus subsp. aureus JH9
fig|367830.3.peg.986, Staphylococcus aureus subsp. aureus USA300
fig|418127.4.peg.1220, Staphylococcus aureus subsp. aureus Mu3
fig|426430.6.peg.1203, Staphylococcus aureus subsp. aureus str. Newman
fig|93061.3.peg.1280, Staphylococcus aureus subsp. aureus NCTC 8325
fig|273036.3.peg.1536, Staphylococcus aureus RF122
No SACOL1360   cd04245 cd04911/cd04916 1 0 0   2 Yes Yes No   637152115   absent 0 460 0 0.74 0
3 α Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis RP62A Sepi_Ab 637000282 176279 637167552 fig|176279.3.peg.976   fig|176280.1.peg.1008, Staphylococcus epidermidis ATCC 12228
No SERP0896   cd04245 cd04911/cd04916 1 0 0   2 Yes Yes No   637167553   absent 0 458 0 0.72 0
3 α Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus JCSC1435 Shae_Ab 637000283 279808 637667565 fig|279808.3.peg.2484   - No SH1580   cd04245 cd04911/cd04916 1 0 0   2 Yes Yes No   637667564   absent 0 460 0 0.77 0
3 α Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus saprophyticus saprophyticus ATCC 15305 Ssap_Ab 637000284 342451 637696830 fig|342451.4.peg.856   - No SSP1439   cd04245 cd04911/cd04916 1 0 0   2 Yes Yes No   637696829   absent 0 455 0 0.77 0
3 α Bacteria Firmicutes Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus faecalis V583 Efae_Aa 637000101 226185 637413642 fig|226185.1.peg.345   - No EF0368   cd04245 cd04911/cd04916 1 0 0   1 Yes No No 637415584     absent 0 450 0 0.94 0
3 α Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acidophilus NCFM Laci_Aa 637000138 272621 637626454 fig|272621.3.peg.1142   - No LBA1215   cd04245 cd04911/cd04916 1 0 0   2 Yes No No   637626452   absent 1 453 0.22 1.03 0.21
3 α Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus acidophilus NCFM Laci_Ab 637000138 272621 637626114 fig|272621.3.peg.171   - No LBA0850   cd04245 cd04911/cd04916 1 0 0   2 Yes No No   637626452   absent 1 451 0.22 1.03 0.21
3 α Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus casei ATCC 334 Lcas_Ab 639633028 321967 639663080 fig|321967.8.peg.110   - No LSEI_0099   cd04245 cd04911/cd04916 1 0 0   2 Yes No No   639665076   absent 1 459 0.21 1.1 0.19
3 α Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus casei ATCC 334 Lcas_Aa 639633028 321967 639665077 fig|321967.8.peg.2098   - No LSEI_2152   cd04245 cd04911/cd04916 1 0 0   2 Yes No No   639665076   absent 2 448 0.44 1.1 0.4
3 α Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus delbrueckii bulgaricus ATCC 11842 Ldel_Ba 637000139 390333 638012589 - fig|321956.5.peg.1088, Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
No Ldb1349   cd04245 cd04911/cd04916 1 0 0   1 Yes No No   638012590   absent 1 446 0.22 0.99 0.22
3 α Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus gasseri ATCC 33323 Lgas_Aa 639633030 324831 639672919 fig|324831.10.peg.1014   fig|1596.1.peg.176, Lactobacillus gasseri
No LGAS_1078   cd04245 cd04911/cd04916 1 0 0   1 Yes No No   639672916   absent 1 451 0.22 1.03 0.21
3 α Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus plantarum WCFS1 Lpla_Ab 637000141 220668 637389415 fig|220668.1.peg.1919   - No lp_2308   cd04245 cd04911/cd04916 1 0 0   2 Yes No No 637387915 637389605   absent 1 450 0.22 1.17 0.19
3 α Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus reuteri F275 Lreu_Aa 640427118 299033 640590446 fig|299033.6.peg.602   - No Lreu_0611   cd04245 cd04911/cd04916 1 0 0   1 No No No       absent 1 452 0.22 1.08 0.2
3 α Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Pediococcus Pediococcus pentosaceus ATCC 25745 Ppen_Aa 639633049 278197 639661294 fig|278197.10.peg.121   - No PEPE_0137   cd04245 cd04911/cd04916 1 0 0   1 No No No       absent 1 459 0.21 0.97 0.22
3 α Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Leuconostoc Leuconostoc mesenteroides mesenteroides ATCC 8293 Lmes_Ba 639633034 203120 639674492 fig|203120.4.peg.767   - No LEUM_0784   cd04245 cd04911/cd04916 1 0 0   1 Yes Yes No 639674494     absent 1 451 0.22 1.06 0.21
3 α Bacteria Firmicutes Bacilli Lactobacillales Leuconostocaceae Oenococcus Oenococcus oeni PSU-1 Ooen_Aa 639633047 203123 639669713 fig|203123.1.peg.1867   - No OEOE_1544   cd04245 cd04911/cd04916 1 0 0   1 Yes No No 639669715     absent 1 479 0.2 1 0.2
3 α Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis cremoris MG1363 Llac_Ca 640069315 416870 640102214 fig|416870.7.peg.1819   fig|272622.8.peg.923, Lactococcus lactis subsp. cremoris SK11
fig|272623.1.peg.759, Lactococcus lactis subsp. lactis Il1403
No llmg_1820   cd04245 cd04911/cd04916 1 0 0   1 Yes Yes No 640101757     absent 1 450 0.22 0.99 0.22
3 α Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus agalactiae 2603V/R Saga_Ba 637000285 208435 637315536 fig|208435.1.peg.337   fig|205921.3.peg.315, Streptococcus agalactiae A909
fig|342613.3.peg.705, Streptococcus agalactiae 18RS21
fig|211110.1.peg.326, Streptococcus agalactiae NEM316
No SAG0339   cd04245 cd04911/cd04916 1 0 0   1 Yes No No   637316302   absent 1 450 0.22 0.85 0.26
3 α Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mutans UA159 Smut_Aa 637000288 210007 637348244 fig|210007.1.peg.1588   - No SMU.1748   cd04245 cd04911/cd04916 1 0 0   1 Yes Yes No   637347527   absent 2 452 0.44 0.87 0.51
3 α Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus pneumoniae R6 Spne_Aa 637000289 171101 637191494 fig|171101.1.peg.374   fig|373153.25.peg.407, Streptococcus pneumonia pneumoniae D39
fig|406557.4.peg.393, Streptococcus pneumoniae SP6-BS73
fig|406558.4.peg.1412, Streptococcus pneumoniae SP9-BS68
fig|453363.3.peg.41, Streptococcus pneumonia SP195
fig|453364.7.peg.187, Streptococcus pneumoniae CDC0288-04
fig|453364.8.peg.192, Streptococcus pneumoniae CDC0288-04
fig|516950.3.peg.431, Streptococcus pneumoniae CGSP14
fig|1313.5.peg.1593, Streptococcus pneumoniae OXC141
fig|170187.1.peg.383, Streptococcus pneumoniae TIGR4
fig|216600.3.peg.326, Streptococcus pneumoniae 23F
fig|406556.4.peg.279, Streptococcus pneumoniae SP3-BS71
fig|406559.4.peg.369, Streptococcus pneumoniae SP11-BS70
fig|406560.4.peg.1710, Streptococcus pneumoniae SP14-BS69
fig|406561.4.peg.2139, Streptococcus pneumoniae SP18-BS74
fig|406562.4.peg.2078, Streptococcus pneumoniae SP19-BS75
fig|406563.4.peg.1829, Streptococcus pneumoniae SP23-BS72
fig|453361.3.peg.53, Streptococcus pneumoniae CDC1087-00
fig|453362.3.peg.69, Streptococcus pneumoniae CDC1873-00
fig|487214.3.peg.512, Streptococcus pneumoniae Hungary19A-6
No spr0374   cd04245 cd04911/cd04916 1 0 0   1 Yes Yes No 637192344     absent 2 454 0.44 0.92 0.48
3 α Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sanguinis SK36 Ssan_Aa 640069334 388919 640104975 fig|388919.8.peg.1726   - No SSA_1943   cd04245 cd04911/cd04916 1 0 0   1 Yes Yes No 640104096     absent 2 460 0.43 0.92 0.47
3 α Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus suis 05ZYH33 Ssui_Aa 640427146 391295 640515160 - fig|1307.2.peg.1263, Streptococcus suis
No SSU05_1811   cd04245 cd04911/cd04916 1 0 0   1 Yes Yes No 640514148     absent 2 453 0.44 0.91 0.48
3 α Bacteria Firmicutes Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus thermophilus CNRZ1066 Sthe_Aa 637000302 299768 637592794 fig|299768.3.peg.1445   fig|322159.7.peg.374, Streptococcus thermophilus LMD-9
fig|264199.3.peg.1235, Streptococcus thermophilus LMG 18311
No str0378   cd04245 cd04911/cd04916 1 0 0   1 Yes Yes No 637592882     absent 2 452 0.44 0.84 0.52
3 α Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium acetobutylicum ATCC 824 Cace_Ab 637000076 272562 637175937 fig|272562.1.peg.448   - No CAC0278   cd04245 cd04911/cd04916 1 0 0   2 Yes No No 637176669     absent 1 437 0.22 0.74 0.3
3 α Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum A ATCC 3502 Cbot_Bc 640427109 413999 640573237 fig|413999.4.peg.1559   fig|441770.4.peg.1542, Clostridium botulinum A str. ATCC 19397
fig|441771.4.peg.1541, Clostridium botulinum A str. Hall
No CBO1640   cd04245 cd04911/cd04916 1 0 0   3 Yes No No 640573238 640573473   absent 1 439 0.22 0.68 0.32
3 α Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium novyi NT Cnov_Ab 639633021 386415 639732718 - - No NT01CX_0187   cd04245 cd04911/cd04916 1 0 0   2 Yes No No 639730992     absent 1 438 0.22 0.6 0.37
3 α Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium tetani E88 Ctet_Ab 637000080 212717 637387085 fig|212717.1.peg.2115   - No CTC02356   cd04245 cd04911/cd04916 1 0 0   2 Yes No No 637387084   637385729 absent 1 439 0.22 0.64 0.34
3 α Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium thermocellum ATCC 27405 Cthe_Aa 640069309 203119 640106799 - - No Cthe_1375   cd04245 cd04911/cd04916 1 0 0   1 Yes No No 640105702 640106800   absent 0 449 0 0.88 0
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila hydrophila ATCC 7966 Ahyd_Ac 639633004 380703 639715593 fig|380703.5.peg.2884   - Yes AHA_3018 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   4 Yes Yes No       absent 1 471 0.21 1.47 0.14
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida salmonicida A449 Asal_Ad 641522605 382245 640465941 fig|382245.6.peg.2842   - Yes ASA_3040 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   4 Yes Yes No       absent 1 482 0.2 1.51 0.13
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea 34H Cpsy_Ab 637000081 167879 637286732 fig|167879.3.peg.4481   - Yes CPS_4291 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 475 0.21 1.12 0.19
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas atlantica T6c Patl_Ab 637000216 342610 638056610 fig|342610.3.peg.1699   - Yes Patl_3580 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes Yes No       absent 2 471 0.42 1.24 0.34
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas haloplanktis TAC125 Phal_Ad 637000217 326442 637735307 fig|326442.4.peg.2446   - Yes PSHAa2379 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   4 Yes Yes No       absent 3 461 0.65 1.1 0.59
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Psychromonadaceae Psychromonas Psychromonas ingrahamii 37 Ping_Ab 639633052 357804 639796485 fig|357804.5.peg.1231   - Yes Ping_1275 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes Yes No       absent 1 472 0.21 1.14 0.18
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella amazonensis SB2B Sama_Ad 639633057 326297 639780240 fig|326297.7.peg.852   - Yes Sama_0905 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   4 Yes Yes No       absent 5 471 1.06 1.27 0.83
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella baltica OS155 Sbal_Ad 640069330 325240 640118446 fig|325240.9.peg.1471   fig|399599.3.peg.1330, Shewanella baltica OS195
fig|402882.10.peg.1391, Shewanella baltica OS185
Yes Sbal_1227 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   4 Yes Yes No       absent 6 472 1.27 1.25 1.02
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella denitrificans OS217 Sden_Ab 637000256 318161 637956786 fig|318161.14.peg.2663   - Yes Sden_2740 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 5 471 1.06 1.19 0.89
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella frigidimarina NCIMB 400 Sfri_Ac 637000257 318167 638135726 fig|318167.10.peg.2789   - Yes Sfri_2906 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 5 471 1.06 1.18 0.9
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella loihica PV-4 Sloi_Ac 640069331 323850 640162612 fig|323850.3.peg.86   - Yes Shew_1079 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 4 472 0.84 1.21 0.69
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella oneidensis MR-1 Sone_Ad 637000258 211586 637345216 fig|211586.1.peg.3113   - Yes SO3415 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   4 Yes Yes No       absent 4 472 0.84 1.28 0.66
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens CN-32 Sput_Ad 640427141 319224 640499921 fig|319224.13.peg.2518   fig|351745.7.peg.1192, Shewanella sp. W3-18-1
Yes Sputcn32_2735 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   4 Yes Yes No       absent 5 472 1.05 1.23 0.85
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella sp. ANA-3 SHEW-3d 639633058 94122 639725690 fig|94122.5.peg.1258   fig|60480.16.peg.1085, Shewanella sp. MR-4
fig|60481.10.peg.1151, Shewanella sp. MR-7
fig|323850.3.peg.86, Shewanella sp. PV-4
fig|351745.7.peg.1192, Shewanella sp. W3-18-1
Yes Shewana3_1139 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   4 Yes Yes No       absent 4 472 0.84 1.25 0.67
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Blochmannia Candidatus Blochmannia floridanus Bflo_a 637000056 203907 637443585 fig|203907.1.peg.104   - Yes Bfl111 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   1 Yes Yes No       absent 2 473 0.42 1.03 0.41
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Buchnera Buchnera aphidicola APS Baph_Aa 637000043 107806 637056212 fig|107806.1.peg.193   fig|198804.1.peg.182, Buchnera aphidicola str. Sg (Schizaphis graminum)
fig|224915.1.peg.171, Buchnera aphidicola str. Bp (Baizongia pistaciae)
Yes BU194 Ask/Hdh cd04257 cd04921/cd04892 1 0 0   1 Yes No No       absent 1 472 0.21 0.9 0.23
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter sp. 638 ENTE-2c 640427113 399742 640490735 fig|399742.4.peg.618   - Yes Ent638_0564 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.52 0.14
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Erwinia Erwinia carotovora atroseptica SCRI1043 Patr_Ac 637000102 218491 637380378 fig|218491.3.peg.2535   - Yes ECA3891 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.38 0.15
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli K12 Ecol_Ac 637000106 83333 637013380 fig|83333.1.peg.2   fig|216593.1.peg.3579, Escherichia coli E2348/69
fig|340197.3.peg.3254, Escherichia coli F11
fig|216592.1.peg.4424, Escherichia coli 042
fig|340184.3.peg.2497, Escherichia coli B7A
fig|340185.3.peg.4022, Escherichia coli E22
fig|344601.3.peg.3512, Escherichia coli B171
fig|344610.3.peg.751, Escherichia coli 53638
fig|481805.3.peg.3926, Escherichia coli ATCC 8739
Yes b0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.53 0.14
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Photorhabdus Photorhabdus luminescens laumondii TTO1 Plum_Ac 637000207 243265 637462394 fig|243265.1.peg.537   - Yes plu0563 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.35 0.16
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica enterica sv Typhi Ty2 Sent_Nc 637000253 209261 637403850 fig|209261.1.peg.2   fig|220341.1.peg.2, Salmonella enterica subsp. enterica serovar Typhi str. CT18
fig|594.1.peg.4953, Salmonella enterica subsp. enterica serovar Gallinarum
fig|295319.3.peg.223, Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150
fig|321314.4.peg.142, Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Yes t0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.53 0.14
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium LT2 Styp_Ac 637000255 99287 637210757 fig|99287.1.peg.2   - Yes STM0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.52 0.14
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella boydii Sb227 Sboy_Ab 637000261 300268 637805820 - fig|344609.3.peg.4330, Shigella boydii BS512
No SBO_0001 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes Yes No       absent 1 471 0.21 1.59 0.13
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae Sd197 Sdys_Ac 640427142 300267 640432437 - fig|216598.1.peg.2076, Shigella dysenteriae M131649
Yes SDY_0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.6 0.13
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri 2a 2457T Sfle_Ac 637000263 198215 637422189 fig|198215.1.peg.2   fig|198214.1.peg.2, Shigella flexneri 2a str. 301
Yes S0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.54 0.14
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella sonnei Ss046 Sson_Ac 640427143 300269 640427857 fig|300269.3.peg.62   fig|216599.1.peg.3714, Shigella sonnei 53G
Yes SSON_0002 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.58 0.13
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Sodalis Sodalis glossinidius morsitans Sglo_Ab 637000270 343509 637852336 fig|343509.6.peg.952   - Yes SG0404 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes Yes No       absent 1 471 0.21 1.33 0.16
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Wigglesworthia Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis Wglo_Aa 637000338 36870 637341983 fig|36870.1.peg.589   - Yes WGLp591 Ask/Hdh cd04257   1 0 0   1 Yes No No       absent 1 492 0.2 0.84 0.24
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia enterocolitica enterocolitica 8081 Yent_Aa 640069335 393305 640074179 fig|630.2.peg.580   - Yes YE0600 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes Yes No       absent 1 471 0.21 1.36 0.15
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis CO92 Ypes_Ab 637000351 214092 637199560 fig|214092.1.peg.617   fig|187410.1.peg.3665, Yersinia pestis KIM
fig|229193.1.peg.3590, Yersinia pestis biovar Medievalis str. 91001
fig|349746.3.peg.1093, Yersinia pestis Angola
fig|386656.4.peg.3124, Yersinia pestis Pestoides F
fig|360102.4.peg.4723, Yersinia pestis Antiqua
fig|377628.5.peg.494, Yersinia pestis Nepal516
Yes YPO0459 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.36 0.15
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis IP 32953 Ypse_Ab 637000355 273123 637532208 fig|273123.1.peg.728   fig|349747.3.peg.3239, Yersinia pseudotuberculosis IP 31758
fig|502800.3.peg.3557, Yersinia pseudotuberculosis YPIII
Yes YPTB0602 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No       absent 1 471 0.21 1.35 0.16
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Haemophilus Haemophilus influenzae 86-028NP Hinf_Aa 637000125 281310 637662054 fig|281310.3.peg.927   fig|71421.1.peg.88, Haemophilus influenzae Rd KW20
fig|262728.1.peg.1309, Haemophilus influenzae R2866
Yes NTHI0167 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   1 Yes Yes No       absent 2 471 0.42 1.14 0.37
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Haemophilus Haemophilus somnus 129PT Hsom_Aa 637000127 205914 638104777 fig|205914.5.peg.1262   fig|228400.4.peg.356, Haemophilus somnus 2336
Yes HS_1214 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   1 Yes Yes No       absent 2 472 0.42 1.09 0.39
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Mannheimia Mannheimia succiniciproducens MBEL55E Msuc_Ab 637000156 221988 637551233 fig|221988.1.peg.1597   - Yes MS1703 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes Yes No       absent 2 472 0.42 1.14 0.37
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida multocida Pm70 Pmul_Ab 637000203 272843 637069694 fig|272843.1.peg.113   - Yes PM0113 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes Yes No       absent 2 471 0.42 1.17 0.36
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae L20 Aple_Ab 640069302 416269 640121917 fig|416269.5.peg.239   fig|228399.1.peg.1512, Actinobacillus pleuropneumoniae serovar 1 str. 4074
Yes APL_0250 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes Yes No       absent 2 471 0.42 1.14 0.37
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Photobacterium Photobacterium profundum SS9 Ppro_Bd 637000206 298386 637585261 fig|298386.1.peg.2778   fig|314280.3.peg.1632, Photobacterium profundum 3TCK
Yes PBPRA0552 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   5 Yes Yes No       absent 1 471 0.21 1.28 0.16
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fd 637000333 243277 637048852 fig|243277.1.peg.4235   fig|412967.3.peg.1956, Vibrio cholerae MAK 757
fig|345073.6.peg.2551, Vibrio cholerae O395
fig|404974.3.peg.863, Vibrio cholerae AM-19226
fig|412883.3.peg.2593, Vibrio cholerae MZO-3
fig|88888881.3.peg.198, Vibrio cholerae NRT36s
Yes VC2364 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   5 Yes Yes No       absent 1 477 0.2 1.32 0.15
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio fischeri ES114 Vfis_Ae 637000334 312309 637636816 fig|312309.3.peg.2118   fig|388396.7.peg.2737, Vibrio fischeri MJ11
Yes VF2118 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   5 Yes Yes No       absent 1 471 0.21 1.18 0.18
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus RIMD 2210633 Vpar_Ae 637000335 223926 637397434 fig|223926.1.peg.494   - Yes VP0494 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   5 Yes Yes No       absent 1 471 0.21 1.23 0.17
4 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio vulnificus CMCP6 Vvul_Ab 637000336 216895 637360958 fig|216895.1.peg.515   fig|196600.1.peg.5087, Vibrio vulnificus YJ016
Yes VV10545 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   4 Yes Yes No       absent 1 471 0.21 1.27 0.17
5 α Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis NCTC 9343 Bfra_Ab 637000024 272559 637226305 fig|272559.3.peg.67   fig|817.1.peg.3591, Bacteroides fragilis 638R
fig|295405.3.peg.49, Bacteroides fragilis YCH46
No BF0558 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes No Yes       absent 2 467 0.42 1.26 0.33
5 α Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron VPI-5482 Bthe_Ab 637000026 226186 637410849 fig|226186.1.peg.2403   - No BT2403 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes No Yes       absent 2 467 0.42 1.36 0.31
5 α Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae UW101 Fjoh_Ac 640427114 376686 640510815 fig|376686.6.peg.2564   - No Fjoh_2575 Ask/Hdh cd04243 cd04921/cd04922 1 0 0   3 Yes Yes Yes     640509711 absent 1 471 0.21 1.07 0.2
5 α Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae UW101 Fjoh_Ab 640427114 376686 640509713 fig|376686.6.peg.1488   - No Fjoh_1494 Ask/Hdh cd04257 cd04921 1 0 0   3 Yes Yes Yes     640509711 absent 0 454 0 1.07 0
5 α Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Gramella Gramella forsetii KT0803 Gfor_Ac 639633025 411154 639718830 fig|411154.5.peg.1862   - No orf1951 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   3 Yes Yes No     639717178 absent 2 471 0.42 1.03 0.41
5 α Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Cytophaga Cytophaga hutchinsonii ATCC 33406 Chut_Ab 637000087 269798 638070073 fig|269798.12.peg.67   - No CHU_0073 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes Yes No       absent 2 470 0.42 1.08 0.39
5 α Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium chlorochromatii CaD3 Cchl_Ab 637000072 340177 637772669 fig|340177.8.peg.148   - No Cag_0142 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes No No       absent 1 473 0.21 1.01 0.21
5 α Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides DSM 266 Cpha_Ab 639633020 290317 639767107 fig|290317.7.peg.2658   - No Cpha266_2542 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes No No       absent 1 468 0.21 1.06 0.2
5 α Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium tepidum TLS Ctep_Ab 637000073 194439 637116968 fig|194439.1.peg.1999   - No CT2030 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes No No       absent 3 471 0.63 1.08 0.58
5 α Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum DSM 273 Plut_Ab 637000205 319225 637770014 fig|319225.3.peg.1963   - No Plut_1983 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes No No       absent 3 472 0.63 1.05 0.6
5 α Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris vibrioformis DSM 265 Pvib_Ab 640427130 290318 640454058 fig|290318.4.peg.1607   - No Cvib_1626 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes No No       absent 3 472 0.63 1.02 0.62
6 α Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium johnsoniae UW101 Fjoh_Aa 640427114 376686 640508746 fig|376686.6.peg.532   - No Fjoh_0535   cd04243   1 0 0   3 Yes Yes Yes     640509711 absent 3 419 0.71 1.07 0.66
6 α Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Gramella Gramella forsetii KT0803 Gfor_Aa 639633025 411154 639720378 fig|411154.5.peg.3320   - No orf3473   cd04243   1 0 0   3 Yes Yes No     639717178 absent 3 417 0.71 1.03 0.69
7 α Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Crenotrichaceae Salinibacter Salinibacter ruber DSM 13855 Srub_Ac 637000250 309807 637843688 fig|309807.5.peg.640   - No SRU_0691 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   4 Yes No No     637843485 absent 5 478 1.04 1.25 0.83
7 α Bacteria Proteobacteria Gammaproteobacteria-upper Thiotrichales Francisellaceae Francisella Francisella tularensis novicida U112 Ftul_Ab 639633024 401614 639752570 fig|401614.5.peg.517   fig|393011.11.peg.523, Francisella tularensis subsp. holarctica OSU18
fig|393115.8.peg.448, Francisella tularensis subsp. tularensis FSC198
fig|418136.4.peg.1584, Francisella tularensis subsp. tularensis WY96-3418
fig|458234.10.peg.514, Francisella tularensis subsp. holarctica FTA
Yes FTN_0525 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes No No       absent 3 463 0.64 0.91 0.7
7 α Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas axonopodis pv. citri 306 Xaxo_Ab 637000342 190486 637295069 fig|190486.1.peg.1790   - Yes XAC1820 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes No No     637296287 absent 7 486 1.44 1.58 0.91
7 α Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris pv. campestris ATCC 33913 Xcam_Ab 637000344 190485 637273904 fig|190485.1.peg.1770   fig|314565.3.peg.1693, Xanthomonas campestris pv. campestris str. 8004
fig|316273.3.peg.2221, Xanthomonas campestris pv. vesicatoria str. 85-10
Yes XCC1800 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes No No     637274959 absent 7 486 1.44 1.59 0.91
7 α Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae pv. oryzae KACC10331 Xory_Aa 637000346 291331 637632478 fig|291331.3.peg.3247   - Yes XOO2242 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes No No     637632098 absent 7 497 1.4 1.62 0.86
7 α Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa Temecula1 Xfas_Aa 637000349 183190 637384081 fig|183190.1.peg.1216   fig|155920.1.peg.1498, Xylella fastidiosa Ann-1
fig|160492.1.peg.2211, Xylella fastidiosa 9a5c
fig|405440.3.peg.1294, Xylella fastidiosa M12
Yes PD1273 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   2 Yes No No       absent 7 479 1.46 1.45 1.01
7 α Eukaryota Streptophyta rosids Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana Columbia Atha_d 639560100 3702 639576220 fig|3702.1.peg.19799   - Yes AT4G19710 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   5 Yes Yes No     639580575 absent 6 563 1.06 1.25 0.85
7 α Eukaryota Streptophyta rosids Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana Columbia Atha_e 639560100 3702 639587599 fig|3702.1.peg.3465   - Yes AT1G31230 Ask/Hdh cd04257 cd04921/cd04922 1 0 0   5 Yes Yes No     639580575 absent 6 558 1.07 1.25 0.86
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila hydrophila ATCC 7966 Ahyd_Ad 639633004 380703 639713170 fig|380703.5.peg.564   - No AHA_0590 Ask/Hdh cd04257   1 0 0   4 Yes Yes No       absent 3 478 0.62 1.47 0.42
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida salmonicida A449 Asal_Ac 641522605 382245 640466677 fig|382245.6.peg.3558   - No ASA_3796 Ask/Hdh cd04257   1 0 0   4 Yes Yes No       absent 3 458 0.65 1.51 0.43
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea 34H Cpsy_Ac 637000081 167879 637282921 fig|167879.3.peg.574   - No CPS_0456 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 4 471 0.84 1.12 0.75
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Idiomarinaceae Idiomarina Idiomarina loihiensis L2TR Iloi_Ab 637000136 283942 637607026 fig|283942.3.peg.2453   - No IL2466 Ask/Hdh cd04257   1 0 0   2 Yes No No       absent 7 461 1.51 1.36 1.11
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas haloplanktis TAC125 Phal_Ac 637000217 326442 637735651 fig|326442.4.peg.2250   - No PSHAa2722 Ask/Hdh cd04257   1 0 0   4 Yes Yes No       absent 3 433 0.69 1.1 0.63
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella amazonensis SB2B Sama_Ac 639633057 326297 639782586 fig|326297.7.peg.2982   - No Sama_3170 Ask/Hdh cd04257   1 0 0   4 Yes Yes No       absent 4 445 0.89 1.27 0.7
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella baltica OS155 Sbal_Ac 640069330 325240 640121041 fig|325240.9.peg.4167   fig|399599.3.peg.572, Shewanella baltica OS195
fig|402882.10.peg.619, Shewanella baltica OS185
No Sbal_3775 Ask/Hdh cd04257   1 0 0   4 Yes Yes No       absent 4 445 0.89 1.25 0.71
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella denitrificans OS217 Sden_Ac 637000256 318161 637954601 fig|318161.14.peg.600   - No Sden_0616 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 4 461 0.86 1.19 0.72
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella frigidimarina NCIMB 400 Sfri_Aa 637000257 318167 638136362 fig|318167.10.peg.3380   - No Sfri_3550 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 4 445 0.89 1.18 0.75
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella loihica PV-4 Sloi_Ab 640069331 323850 640162050 fig|323850.3.peg.3078   - No Shew_0521 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 4 445 0.89 1.21 0.74
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella oneidensis MR-1 Sone_Ac 637000258 211586 637345799 fig|211586.1.peg.3680   - No SO4055 Ask/Hdh cd04257   1 0 0   4 Yes Yes No       absent 4 445 0.89 1.28 0.7
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens CN-32 Sput_Ac 640427141 319224 640497743 fig|319224.13.peg.554   - No Sputcn32_0617 Ask/Hdh cd04257   1 0 0   4 Yes Yes No       absent 4 445 0.89 1.23 0.72
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella sp. ANA-3 SHEW-3c 639633058 94122 639728221 fig|94122.5.peg.3605   fig|351745.7.peg.3291, Shewanella sp. W3-18-1
No Shewana3_3613 Ask/Hdh cd04257   1 0 0   4 Yes Yes No       absent 4 445 0.89 1.25 0.71
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter sp. 638 ENTE-2b 640427113 399742 640494259 fig|399742.4.peg.3836   - No Ent638_4034 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 6 464 1.29 1.52 0.85
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Erwinia Erwinia carotovora atroseptica SCRI1043 Patr_Ab 637000102 218491 637380755 fig|218491.3.peg.496   - No ECA4251 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 5 465 1.07 1.38 0.78
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli K12 Ecol_Ab 637000106 83333 637017265 fig|83333.1.peg.3859   fig|316407.3.peg.3205, Escherichia coli W3110
fig|331111.3.peg.2094, Escherichia coli E24377A
fig|331112.3.peg.3897, Escherichia coli HS
fig|340184.3.peg.4048, Escherichia coli B7A
fig|340185.3.peg.2265, Escherichia coli E22
fig|344601.3.peg.3752, Escherichia coli B171
fig|344610.3.peg.2178, Escherichia coli 53638
fig|83334.1.peg.4845, Escherichia coli O157:H7
fig|155864.1.peg.4885, Escherichia coli O157:H7 EDL933
fig|340186.3.peg.1247, Escherichia coli E110019
fig|481805.3.peg.4383, Escherichia coli ATCC 8739
No b3940 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 6 464 1.29 1.53 0.84
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Photorhabdus Photorhabdus luminescens laumondii TTO1 Plum_Ab 637000207 243265 637466492 fig|243265.1.peg.4538   - No plu4755 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 5 465 1.07 1.35 0.79
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica enterica sv Typhi Ty2 Sent_Nb 637000253 209261 637407206 fig|209261.1.peg.3275   fig|220341.1.peg.3342, Salmonella enterica subsp. enterica serovar Typhi str. CT18
fig|321314.4.peg.3491, Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
fig|594.1.peg.4243, Salmonella enterica subsp. enterica serovar Gallinarum
fig|295319.3.peg.3875, Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150
No t3517 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 6 464 1.29 1.53 0.84
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium LT2 Styp_Ab 637000255 99287 637214797 fig|99287.1.peg.3955   - No STM4101 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 6 464 1.29 1.52 0.85
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae Sd197 Sdys_Ab 640427142 300267 640436000 - fig|216598.1.peg.398, Shigella dysenteriae M131649
Yes SDY_3775 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 6 464 1.29 1.6 0.81
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri 2a 2457T Sfle_Ab 637000263 198215 637425477 fig|198215.1.peg.3196   fig|198214.1.peg.3784, Shigella flexneri 2a str. 301
No S3729 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 6 464 1.29 1.54 0.84
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella sonnei Ss046 Sson_Ab 640427143 300269 640431783 fig|300269.3.peg.2930   fig|216599.1.peg.3246, Shigella sonnei 53G
No SSON_4114 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 6 464 1.29 1.58 0.82
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia enterocolitica enterocolitica 8081 Yent_Ab 640069335 393305 640073688 fig|630.2.peg.112   - No YE0112 Ask/Hdh cd04257   1 0 0   2 Yes Yes No       absent 5 465 1.07 1.36 0.79
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis CO92 Ypes_Ac 637000351 214092 637199230 fig|214092.1.peg.290   fig|187410.1.peg.296, Yersinia pestis KIM
fig|229193.1.peg.116, Yersinia pestis biovar Medievalis str. 91001
fig|386656.4.peg.3714, Yersinia pestis Pestoides F
fig|360102.4.peg.508, Yersinia pestis Antiqua
fig|377628.5.peg.4310, Yersinia pestis Nepal516
No YPO0116 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 5 465 1.07 1.36 0.79
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis IP 32953 Ypse_Ac 637000355 273123 637531686 fig|273123.1.peg.241   fig|349747.3.peg.2417, Yersinia pseudotuberculosis IP 31758
fig|502800.3.peg.4039, Yersinia pseudotuberculosis YPIII
No YPTB0106 Ask/Hdh cd04257   1 0 0   3 Yes Yes No       absent 5 465 1.07 1.35 0.79
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Photobacterium Photobacterium profundum SS9 Ppro_Be 637000206 298386 637584971 fig|298386.1.peg.2485   fig|314280.3.peg.5300, Photobacterium profundum 3TCK
No PBPRA0262 Ask/Hdh cd04257   1 0 0   5 Yes Yes No       absent 3 455 0.65 1.28 0.51
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fc 637000333 243277 637049178 fig|243277.1.peg.2653   fig|345072.3.peg.2492, Vibrio cholerae MO10
fig|345073.6.peg.2833, Vibrio cholerae O395
fig|412967.3.peg.523, Vibrio cholerae MAK 757
fig|404974.3.peg.766, Vibrio cholerae AM-19226
No VC2684 Ask/Hdh cd04257   1 0 0   5 Yes Yes No       absent 3 456 0.65 1.32 0.49
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio fischeri ES114 Vfis_Ad 637000334 312309 637636979 fig|312309.3.peg.2266   fig|388396.7.peg.974, Vibrio fischeri MJ11
No VF2266 Ask/Hdh cd04257   1 0 0   5 Yes Yes No       absent 4 458 0.87 1.18 0.74
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus RIMD 2210633 Vpar_Ad 637000335 223926 637399786 fig|223926.1.peg.2764   - No VP2764 Ask/Hdh cd04257   1 0 0   5 Yes Yes No       absent 2 456 0.43 1.23 0.35
8 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio vulnificus CMCP6 Vvul_Aa 637000336 216895 637361735 fig|216895.1.peg.1255   fig|196600.1.peg.3073, Vibrio vulnificus YJ016
No VV11365 Ask/Hdh cd04257   1 0 0   4 Yes Yes No       absent 2 456 0.43 1.27 0.34
9 α Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Crenotrichaceae Salinibacter Salinibacter ruber DSM 13855 Srub_Ad 637000250 309807 637843304 fig|309807.5.peg.269   - No SRU_0301 Ask/DAP decarboxylase cd04259   1 0 0   4 Yes No No     637843485 absent 9 497 1.81 1.25 1.45
9 α Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Maricaulis Maricaulis maris MCS10 Mmar_Ab 637000157 394221 638139870 fig|394221.5.peg.388   - Yes Mmar10_0407 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0   3 Yes No No     638142117 absent 9 506 1.77 1.43 1.24
9 α Bacteria Proteobacteria Gammaproteobacteria-upper Legionellales Legionellaceae Legionella Legionella pneumophila pneumophila Philadelphia Lpne_Aa 637000148 272624 637131750 fig|272624.3.peg.646   fig|297245.3.peg.2054, Legionella pneumophila str. Lens
fig|297246.3.peg.2833, Legionella pneumophila str. Paris
fig|400673.6.peg.1276, Legionella pneumophila str. Corby
Yes lpg1811 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0   1 No No No       absent 8 507 1.57 1.15 1.37
9 α Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas axonopodis pv. citri 306 Xaxo_Aa 637000342 190486 637296160 fig|190486.1.peg.2864   - Yes XAC2911 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0   2 Yes No No     637296287 absent 14 512 2.73 1.58 1.73
9 α Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris pv. campestris ATCC 33913 Xcam_Aa 637000344 190485 637274845 fig|190485.1.peg.2694   fig|314565.3.peg.200, Xanthomonas campestris pv. campestris str. 8004
fig|316273.3.peg.3125, Xanthomonas campestris pv. vesicatoria str. 85-10
Yes XCC2741 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0   2 Yes No No     637274959 absent 14 512 2.73 1.59 1.72
9 α Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas oryzae pv. oryzae KACC10331 Xory_Ab 637000346 291331 637631754 fig|291331.3.peg.3410   - Yes XOO1433 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0   2 Yes No No     637632098 absent 14 512 2.73 1.62 1.69
9 α Bacteria Proteobacteria Gammaproteobacteria-upper Xanthomonadales Xanthomonadaceae Xylella Xylella fastidiosa Temecula1 Xfas_Ab 637000349 183190 637383234 fig|183190.1.peg.382   fig|155920.1.peg.1233, Xylella fastidiosa Ann-1
fig|160492.1.peg.1113, Xylella fastidiosa 9a5c
fig|405440.3.peg.418, Xylella fastidiosa M12
Yes PD0408 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0   2 Yes No No       absent 14 514 2.72 1.45 1.88
9 α Bacteria Proteobacteria Alphaproteobacteria Rhodobacterales Hyphomonadaceae Oceanicaulis Oceanicaulis alexandrii HTCC2633 Oale_Ab 638341138 314254 638891165 fig|314254.3.peg.404   - Yes OA2633_13100 Ask/DAP decarboxylase cd04259 cd04935/cd04920 1 0 0   3 Yes No No     638891809 absent 4 465 0.86 1.31 0.66
10 α Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium chlorochromatii CaD3 Cchl_Aa 637000072 340177 637774560 fig|340177.8.peg.2077   - No Cag_2023   cd04258 cd04912/cd04917 1 0 0   2 Yes No No       absent 3 471 0.63 1.01 0.62
10 α Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium phaeobacteroides DSM 266 Cpha_Aa 639633020 290317 639767148 fig|290317.7.peg.2702   - No Cpha266_2583   cd04258 cd04912/cd04917 1 0 0   2 Yes No No       absent 3 471 0.63 1.06 0.59
10 α Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Chlorobium Chlorobium tepidum TLS Ctep_Aa 637000073 194439 637115017 fig|194439.1.peg.95   - No CT0095   cd04258 cd04912/cd04892 1 0 0   2 Yes No No       absent 4 470 0.85 1.08 0.79
10 α Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum DSM 273 Plut_Aa 637000205 319225 637770091 fig|319225.3.peg.2040   - No Plut_2060   cd04258 cd04912/cd04892 1 0 0   2 Yes No No       absent 4 471 0.84 1.05 0.8
10 α Bacteria Chlorobi Chlorobia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris vibrioformis DSM 265 Pvib_Aa 640427130 290318 640454134 fig|290318.4.peg.1683   - No Cvib_1702   cd04258 cd04912/cd04892 1 0 0   2 Yes No No       absent 4 471 0.84 1.02 0.82
11 α Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis NCTC 9343 Bfra_Aa 637000024 272559 637228568 fig|272559.3.peg.2881   fig|295405.3.peg.3359, Bacteroides fragilis YCH46
No BF2886   cd04243 cd04912/cd04917 1 0 0   3 Yes No Yes       absent 2 439 0.45 1.26 0.36
11 α Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron VPI-5482 Bthe_Aa 637000026 226186 637409806 fig|226186.1.peg.1375   - No BT1375   cd04243 cd04912/cd04917 1 0 0   3 Yes No Yes       absent 2 439 0.45 1.36 0.33
11 α Bacteria Bacteroidetes Bacteroidetes Bacteroidales Porphyromonadaceae Porphyromonas Porphyromonas gingivalis W83 Pgin_Aa 637000209 242619 637150757 fig|242619.1.peg.1878   - No PG2189   cd04243 cd04912/cd04917 1 0 0   1 No No No       absent 3 446 0.67 1.03 0.65
11 α Bacteria Bacteroidetes Flavobacteria Flavobacteriales Flavobacteriaceae Gramella Gramella forsetii KT0803 Gfor_Ab 639633025 411154 639718410 fig|411154.5.peg.1464   - No orf1536   cd04243 cd04912/cd04917 1 0 0   3 Yes Yes No     639717178 absent 2 444 0.45 1.03 0.44
11 α Bacteria Bacteroidetes Sphingobacteria Sphingobacteriales Flexibacteraceae Cytophaga Cytophaga hutchinsonii ATCC 33406 Chut_Aa 637000087 269798 638073708 fig|269798.12.peg.3547   - No CHU_3721   cd04243 cd04912/cd04917 1 0 0   2 Yes Yes No       absent 1 444 0.22 1.08 0.2
11 α Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides fragilis NCTC 9343 Bfra_Ac 637000024 272559 637226273 fig|272559.3.peg.584   fig|817.1.peg.3627, Bacteroides fragilis 638R
fig|295405.3.peg.664, Bacteroides fragilis YCH46
No BF0526   cd04243 cd04912/cd04917 KFGK 0 0   3 Yes No Yes       absent 4 472 0.84 1.26 0.67
11 α Bacteria Bacteroidetes Bacteroidetes Bacteroidales Bacteroidaceae Bacteroides Bacteroides thetaiotaomicron VPI-5482 Bthe_Ac 637000026 226186 637410344 fig|226186.1.peg.1901   - No BT1901   cd04243 cd00000cd04917 KFEK 0 0   3 Yes No Yes       absent 3 436 0.68 1.36 0.5
12 α Bacteria Acidobacteria Acidobacteria Acidobacteriales Acidobacteriaceae   Acidobacteria bacterium Ellin345 ACID-2a 637000001 204669 637984508 fig|204669.6.peg.2478   - No Acid345_2491   cd04243 cd04912/cd04892 1 0 0   2 Yes No No 637983490   637986196 absent 1 456 0.21 1.35 0.16
12 α Bacteria Acidobacteria Acidobacteria Acidobacteriales Acidobacteriaceae   Acidobacteria bacterium Ellin345 ACID-2b 637000001 204669 637983491 fig|204669.6.peg.1471   - No Acid345_1482   cd04243 cd04912/cd04892 1 0 0   2 Yes No No 637983490   637986196 absent 2 469 0.42 1.35 0.31
12 α Bacteria Acidobacteria Solibacteres Solibacterales Solibacteraceae Solibacter Solibacter usitatus Ellin6076 Susi_Aa 639633060 234267 639686479 fig|234267.9.peg.6617   - No Acid_6982   cd04258 cd04912/cd04917 1 0 0   2 Yes No No 639680070   639686527 absent 1 463 0.21 1.47 0.14
13 α Eukaryota Streptophyta rosids Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana Columbia Atha_a 639560100 3702 639579615 fig|3702.1.peg.23535   - No AT5G14060   cd04244 cd04933/cd04918 1 0 0   5 Yes Yes No     639580575 absent 4 544 0.73 1.25 0.58
13 α Eukaryota Streptophyta rosids Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana Columbia Atha_c 639560100 3702 639571187 fig|3702.1.peg.12136   - No AT3G02020   cd04244 cd04933/cd04918 1 0 0   5 Yes Yes No     639580575 absent 3 559 0.53 1.25 0.42
13 α Eukaryota Streptophyta rosids Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana Columbia Atha_b 639560100 3702 639579531 fig|3702.1.peg.23445   - No AT5G13280   cd04244 cd04933/cd04918 1 0 0 2cdq 5 Yes Yes No     639580575 absent 4 569 0.7 1.25 0.56
14 α Archaea Euryarchaeota Archaeoglobi Archaeoglobales Archaeoglobaceae Archaeoglobus Archaeoglobus fulgidus DSM 4304 Aful_Aa 638154502 224325 638157227 fig|224325.1.peg.693   - No AF0700   cd04244 cd04921/cd04924 1 0 0   1 Yes No Yes     638157474 absent 2 462 0.43 1.04 0.41
14 α Archaea Euryarchaeota environmental sample unclassified unclassified uncultured uncultured methanogenic archaeon RC-I Umet_Aa 640427153 351160 640535568 - - No RCIX1827   cd04244 cd04921/cd04924 1 0 0   1 Yes No Yes     640537168 absent 1 467 0.21 0.94 0.22
14 α Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosaetaceae Methanosaeta Methanosaeta thermophila PT Mthe-2_Aa 639633038 349307 639700270 fig|349307.9.peg.1229   - No Mthe_1253   cd04244 cd04921/cd04924 1 0 0   1 Yes No Yes     639699864 absent 2 465 0.43 1.05 0.41
14 α Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanococcoides Methanococcoides burtonii DSM 6242 Mbur_Aa 637000161 259564 637959721 fig|259564.8.peg.1892   - No Mbur_1980   cd04244 cd04921/cd04924 1 0 0   1 Yes No Yes     637958859 absent 2 469 0.42 0.87 0.48
14 α Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina acetivorans C2A Mace_Aa 638154508 188937 638174861 fig|188937.1.peg.131   - No MA0131   cd04244 cd04921/cd04924 1 0 0   1 Yes No Yes     638177380 absent 2 472 0.42 1.06 0.4
14 α Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina barkeri fusaro Mbar_Aa 637000162 269797 637699748 fig|269797.3.peg.335   fig|2208.1.peg.3811, Methanosarcina barkeri
No Mbar_A086   cd04244 cd04921/cd04924 1 0 0   1 Yes No Yes     637700779 absent 2 472 0.42 1.04 0.4
14 α Archaea Euryarchaeota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei Go1 Mmaz_Aa 638154509 192952 638165942 fig|192952.1.peg.1417   - No MM1417   cd04244 cd04921/cd04924 1 0 0   1 Yes No Yes     638167288 absent 2 479 0.41 0.94 0.44
15 α Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus marisnigri JR1 Mmar-6_Aa 640069318 368407 640114892 fig|368407.6.peg.221   - No Memar_0222   cd04244 cd04921/cd04924 1 0 0   1 Yes No Yes     640115657 absent 2 462 0.43 1 0.43
15 α Archaea Euryarchaeota Methanomicrobia Methanomicrobiales Methanospirillaceae Methanospirillum Methanospirillum hungatei JF-1 Mhun_Aa 637000164 323259 637898663 fig|323259.5.peg.3196   - No Mhun_3054   cd04244 cd04921/cd04924 1 0 0   1 Yes No Yes     637897902 absent 3 465 0.64 1.05 0.61
16 α Archaea Euryarchaeota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococc Methanocaldococcus jannaschii DSM 2661 Mjan_Aa 638154505 243232 638201890 fig|243232.1.peg.587   - No MJ0571   cd04244 cd04921/cd04892 1 0 0 2hmf/3c1m/3c1n 1 Yes No Yes     638203005 absent 1 473 0.21 0.73 0.29
16 α Archaea Euryarchaeota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis C5 Mmar-5_Aa 640069316 402880 640166081 fig|402880.8.peg.574   fig|267377.1.peg.1017, Methanococcus maripaludis S2
fig|426368.9.peg.267, Methanococcus maripaludis C7
fig|444158.3.peg.1627, Methanococcus maripaludis C6
No MmarC5_0577   cd04244 cd04921/cd04892 1 0 0   1 Yes No Yes     640167220 absent 1 468 0.21 0.65 0.32
17 α Bacteria Deinococcus-Th Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis DSM 11300 Dgeo_Aa 641228488 319795 641230142 fig|68909.1.peg.2114   - No Dgeo_1127   cd04244 cd00000cd04892 1 0 0   1 Yes Yes No     641229624 absent 2 470 0.42 1.38 0.3
17 α Bacteria Deinococcus-Th Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiodurans R1 Drad_Aa 637000092 243230 637035689 fig|243230.1.peg.1547   - No DR1365   cd04244 cd00000cd04892 1 0 0   1 Yes Yes No     637035602 absent 2 473 0.42 1.38 0.3
18 α Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus abyssi GE5 Paby_Aa 638154514 272844 638200418 fig|272844.1.peg.1088   - No PAB1674   cd04234   1 0 0   2 Yes No No     638200276 absent 4 368 1.08 1.18 0.92
18 α Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus abyssi GE5 Paby_Ab 638154514 272844 638200417 fig|272844.1.peg.1087   - No PAB1675   cd04234   1 0 0   2 Yes No No     638200276 absent 3 352 0.85 1.18 0.72
18 α Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus DSM 3638 Pfur_Aa 638154515 186497 638173617 fig|186497.1.peg.1090   - No PF1053   cd04234   1 0 0   2 Yes No No     638173671 absent 2 359 0.55 1.23 0.45
18 α Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus furiosus DSM 3638 Pfur_Ab 638154515 186497 638173616 fig|186497.1.peg.1089   - No PF1052   cd04234   1 0 0   2 Yes No No     638173671 absent 4 373 1.07 1.23 0.87
18 α Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus horikoshii OT3 Phor_Aa 638154516 70601 638186593 fig|70601.1.peg.1060   - No PH1086   cd04234   1 0 0   2 Yes No No     638186581 absent 4 346 1.15 1.18 0.97
18 α Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus horikoshii OT3 Phor_Ab 638154516 70601 638186340 fig|70601.1.peg.838   - No PH0858   cd04234   1 0 0   2 Yes No No     638186581 absent 2 359 0.55 1.18 0.47
18 α Archaea Euryarchaeota Thermococci Thermococcales Thermococcaceae Thermococcus Thermococcus kodakaraensis KOD1 Tkod_Aa 638154520 69014 638207620 fig|69014.3.peg.1316   - No TK1445   cd04234   1 0 0   1 Yes No No     638207810 absent 5 358 1.39 1.29 1.08
19 α Archaea Crenarchaeota Thermoprotei Desulfurococcales Desulfurococcaceae Aeropyrum Aeropyrum pernix K1 Aper_Aa 638154501 272557 638188901 fig|272557.1.peg.846   - No APE1140   cd04244 cd04921 1 0 0   1 Yes No No     638188905 absent 6 455 1.31 1.3 1.01
19 α Archaea Euryarchaeota Methanopyri Methanopyrales Methanopyraceae Methanopyrus Methanopyrus kandleri AV19 Mkan_Aa 638154507 190192 638169593 fig|190192.1.peg.1531   - Yes MK1535   cd04243 cd04921 1 0 0   2 Yes No Yes     638169614 absent 4 429 0.93 1.24 0.75
20 α Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Metallosphaera Metallosphaera sedula DSM 5348 Msed_Aa 640427120 399549 640507593 fig|399549.6.peg.1677   - No Msed_1699   cd04243 cd04921 0 0 1   1 Yes No No     640507891 absent 2 443 0.45 1.05 0.43
20 α Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius DSM 639 Saci_Aa 638154517 330779 638198328 fig|330779.3.peg.331   - No Saci_1412   cd04243 cd04921/cd04892 0 0 1   1 Yes No No     638198547 absent 2 447 0.44 0.99 0.44
20 α Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus solfataricus P2 Ssol_Aa 638154518 273057 638162108 fig|273057.1.peg.796   - No SSO0876   cd04243 cd04921 0 0 1   1 Yes No No     638161878 absent 1 446 0.22 1.05 0.21
20 α Archaea Crenarchaeota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus tokodaii 7 Stok_Aa 638154519 273063 638193573 fig|273063.1.peg.1341   - No ST1241   cd04243 cd04921/cd04892 0 0 1   1 Yes No No     638193904 absent 2 447 0.44 1.01 0.44
21 α Bacteria Proteobacteria Deltaproteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus HD100 Bbac_Ab 637000030 264462 637480837 fig|264462.1.peg.121   - Yes Bd0134   cd04258 cd04932/cd04917 1 0 0   2 No No No       absent 3 460 0.65 1.2 0.54
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas hydrophila hydrophila ATCC 7966 Ahyd_Ab 639633004 380703 639715145 fig|380703.5.peg.2452   - Yes AHA_2570   cd04258 cd04932/cd04917 1 0 0   4 Yes Yes No       absent 3 450 0.66 1.47 0.45
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Aeromonadales Aeromonadaceae Aeromonas Aeromonas salmonicida salmonicida A449 Asal_Ab 641522605 382245 640465501 fig|382245.6.peg.2406   - Yes ASA_2578   cd04258 cd04932/cd04917 1 0 0   4 Yes Yes No       absent 3 450 0.66 1.51 0.44
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Colwelliaceae Colwellia Colwellia psychrerythraea 34H Cpsy_Aa 637000081 167879 637284466 fig|167879.3.peg.1920   - Yes CPS_2004   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 1 456 0.21 1.12 0.19
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Idiomarinaceae Idiomarina Idiomarina loihiensis L2TR Iloi_Aa 637000136 283942 637605979 fig|283942.3.peg.1805   - Yes IL1439   cd04258 cd04932/cd04917 1 0 0   2 Yes No No       absent 2 446 0.44 1.36 0.32
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas atlantica T6c Patl_Aa 637000216 342610 638056456 fig|342610.3.peg.2345   - Yes Patl_3425   cd04258 cd04932/cd04917 1 0 0   2 Yes Yes No       absent 2 452 0.44 1.24 0.35
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Pseudoalteromonadaceae Pseudoalteromona Pseudoalteromonas haloplanktis TAC125 Phal_Ab 637000217 326442 637734159 fig|326442.4.peg.1917   - Yes PSHAa1250   cd04258 cd04932/cd04917 1 0 0   4 Yes Yes No       absent 3 506 0.59 1.1 0.54
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella amazonensis SB2B Sama_Ab 639633057 326297 639779938 fig|326297.7.peg.566   - Yes Sama_0603   cd04258 cd04932/cd04917 1 0 0   4 Yes Yes No       absent 2 452 0.44 1.27 0.35
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella baltica OS155 Sbal_Ab 640069330 325240 640118007 fig|325240.9.peg.1016   fig|399599.3.peg.3919, Shewanella baltica OS195
fig|402882.10.peg.3952, Shewanella baltica OS185
Yes Sbal_0788   cd04258 cd04932/cd04917 1 0 0   4 Yes Yes No       absent 2 451 0.44 1.25 0.35
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella denitrificans OS217 Sden_Aa 637000256 318161 637957033 fig|318161.14.peg.2891   - Yes Sden_2982   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 449 0.44 1.19 0.37
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella frigidimarina NCIMB 400 Sfri_Ab 637000257 318167 638133293 fig|318167.10.peg.510   - Yes Sfri_0535   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 459 0.43 1.18 0.36
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella loihica PV-4 Sloi_Aa 640069331 323850 640162312 fig|323850.3.peg.1388   - Yes Shew_0779   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 452 0.44 1.21 0.36
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella oneidensis MR-1 Sone_Ab 637000258 211586 637345738 fig|211586.1.peg.3619   - Yes SO3986   cd04258 cd04932/cd04917 1 0 0   4 Yes Yes No       absent 2 451 0.44 1.28 0.34
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella putrefaciens CN-32 Sput_Ab 640427141 319224 640497805 fig|319224.13.peg.616   - Yes Sputcn32_0680   cd04258 cd04932/cd04917 1 0 0   4 Yes Yes No       absent 2 451 0.44 1.23 0.36
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Alteromonadales Shewanellaceae Shewanella Shewanella sp. ANA-3 SHEW-3b 639633058 94122 639725187 fig|94122.5.peg.792   fig|60480.16.peg.625, Shewanella sp. MR-4
fig|60481.10.peg.3171, Shewanella sp. MR-7
fig|351745.7.peg.3231, Shewanella sp. W3-18-1
Yes Shewana3_0652   cd04258 cd04932/cd04917 1 0 0   4 Yes Yes No       absent 2 451 0.44 1.25 0.35
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Enterobacter Enterobacter sp. 638 ENTE-2a 640427113 399742 640490395 fig|399742.4.peg.310   - Yes Ent638_0229   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 449 0.44 1.52 0.29
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Erwinia Erwinia carotovora atroseptica SCRI1043 Patr_Aa 637000102 218491 637380470 fig|218491.3.peg.2695   - Yes ECA3981   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 458 0.43 1.38 0.31
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Escherichia Escherichia coli K12 Ecol_Aa 637000106 83333 637017348 fig|83333.1.peg.3933   fig|316407.3.peg.3861, Escherichia coli W3110
fig|344610.3.peg.1286, Escherichia coli 53638
fig|481805.3.peg.4309, Escherichia coli ATCC 8739
fig|83334.1.peg.4983, Escherichia coli O157:H7
fig|199310.1.peg.4885, Escherichia coli CFT073
fig|216592.1.peg.2314, Escherichia coli 042
fig|216593.1.peg.4005, Escherichia coli E2348/69
fig|405955.9.peg.3794, Escherichia coli APEC O1
fig|340197.3.peg.2023, Escherichia coli F11
fig|331111.3.peg.2172, Escherichia coli E24377A
fig|331112.3.peg.3975, Escherichia coli HS
fig|340184.3.peg.2540, Escherichia coli B7A
fig|340185.3.peg.1307, Escherichia coli E22
fig|340186.3.peg.943, Escherichia coli E110019
fig|344601.3.peg.992, Escherichia coli B171
Yes b4024   cd04258 cd04932/cd04917 1 0 0 1ohi/2j0w/2j0x/ 3 Yes Yes No       absent 2 449 0.44 1.53 0.29
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Photorhabdus Photorhabdus luminescens laumondii TTO1 Plum_Aa 637000207 243265 637466099 fig|243265.1.peg.4176   - Yes plu4380   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 459 0.43 1.35 0.32
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella enterica enterica sv Typhi Ty2 Sent_Na 637000253 209261 637407781 fig|209261.1.peg.3840   fig|220341.1.peg.3908, Salmonella enterica subsp. enterica serovar Typhi str. CT18
fig|295319.3.peg.4005, Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150
fig|594.1.peg.585, Salmonella enterica subsp. enterica serovar Gallinarum
Yes t4126   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 449 0.44 1.53 0.29
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Salmonella Salmonella typhimurium LT2 Styp_Aa 637000255 99287 637214913 fig|99287.1.peg.4058   - Yes STM4220   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 449 0.44 1.52 0.29
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella boydii Sb227 Sboy_Aa 637000261 300268 637809672 - fig|344609.3.peg.799, Shigella boydii BS512
No SBO_4052   cd04258 cd04932/cd04917 1 0 0   2 Yes Yes No       absent 2 449 0.44 1.59 0.28
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella dysenteriae Sd197 Sdys_Aa 640427142 300267 640436423 - fig|216598.1.peg.1703, Shigella dysenteriae M131649
Yes SDY_4227   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 449 0.44 1.6 0.28
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella flexneri 2a 2457T Sfle_Aa 637000263 198215 637425313 fig|198215.1.peg.3044   fig|198214.1.peg.3935, Shigella flexneri 2a str. 301
Yes S3550   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 449 0.44 1.54 0.29
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Shigella Shigella sonnei Ss046 Sson_Aa 640427143 300269 640431867 fig|300269.3.peg.3287   fig|216599.1.peg.3470, Shigella sonnei 53G
Yes SSON_4202   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 449 0.44 1.58 0.28
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Sodalis Sodalis glossinidius morsitans Sglo_Aa 637000270 343509 637854125 fig|343509.6.peg.4727   - Yes SG2147   cd04258 cd04932/cd04917 1 0 0   2 Yes Yes No       absent 2 454 0.44 1.33 0.33
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pestis CO92 Ypes_Aa 637000351 214092 637202683 fig|214092.1.peg.3686   fig|187410.1.peg.21, Yersinia pestis KIM
fig|229193.1.peg.2971, Yersinia pestis biovar Medievalis str. 91001
fig|349746.3.peg.3272, Yersinia pestis Angola
fig|360102.4.peg.249, Yersinia pestis Antiqua
fig|377628.5.peg.159, Yersinia pestis Nepal516
fig|386656.4.peg.359, Yersinia pestis Pestoides F
Yes YPO3719   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 461 0.43 1.36 0.32
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Enterobacteriales Enterobacteriaceae Yersinia Yersinia pseudotuberculosis IP 32953 Ypse_Aa 637000355 273123 637535257 fig|273123.1.peg.3714   fig|349747.3.peg.2241, Yersinia pseudotuberculosis IP 31758
fig|502800.3.peg.363, Yersinia pseudotuberculosis YPIII
Yes YPTB3650   cd04258 cd04932/cd04917 1 0 0   3 Yes Yes No       absent 2 461 0.43 1.35 0.32
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Haemophilus Haemophilus ducreyi 35000HP Hduc_Aa 637000124 233412 637129370 fig|233412.1.peg.1164   - Yes HD1375   cd04258 cd04932/cd04917 1 0 0   1 No No No       absent 3 451 0.66 1.1 0.6
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Mannheimia Mannheimia succiniciproducens MBEL55E Msuc_Aa 637000156 221988 637551140 fig|221988.1.peg.1517   - Yes MS1613   cd04258 cd04932/cd04917 1 0 0   2 Yes Yes No       absent 3 450 0.66 1.14 0.58
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Pasteurella Pasteurella multocida multocida Pm70 Pmul_Aa 637000203 272843 637070551 fig|272843.1.peg.937   - Yes PM0937   cd04258 cd04932/cd04917 1 0 0   2 Yes Yes No       absent 3 450 0.66 1.17 0.56
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Pasteurellales Pasteurellaceae Actinobacillus Actinobacillus pleuropneumoniae L20 Aple_Aa 640069302 416269 640122376 fig|416269.5.peg.680   fig|228399.1.peg.1687, Actinobacillus pleuropneumoniae serovar 1 str. 4074
Yes APL_0710   cd04258 cd04932/cd04917 1 0 0   2 Yes Yes No       absent 3 450 0.66 1.14 0.58
21 α Bacteria Proteobacteria Gammaproteobacteria-upper Thiotrichales Francisellaceae Francisella Francisella tularensis novicida U112 Ftul_Aa 639633024 401614 639753766 fig|401614.5.peg.1694   - Yes FTN_1730   cd04258 cd04932/cd04917 1 0 0   2 Yes No No       absent 0 451 0 0.91 0
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Photobacterium Photobacterium profundum SS9 Ppro_Bc 637000206 298386 637587992 fig|298386.1.peg.5506   fig|314280.3.peg.3571, Photobacterium profundum 3TCK
Yes PBPRA3293   cd04258 cd04932/cd04917 1 0 0   5 Yes Yes No       absent 2 459 0.43 1.28 0.34
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio cholerae O1 biovar eltor str. N16961 Vcho_Fb 637000333 243277 637046846 fig|243277.1.peg.386   fig|345072.3.peg.2981, Vibrio cholerae MO10
fig|345073.6.peg.3259, Vibrio cholerae O395
fig|345076.3.peg.2349, Vibrio cholerae V52
fig|412614.3.peg.1693, Vibrio cholerae 2740-80
fig|412967.3.peg.2101, Vibrio cholerae MAK 757
fig|417399.3.peg.1317, Vibrio cholerae NCTC8457
fig|417400.3.peg.1340, Vibrio cholerae B33
fig|412966.3.peg.2123, Vibrio cholerae 1587
fig|404974.3.peg.2203, Vibrio cholerae AM-19226
fig|412883.3.peg.1773, Vibrio cholerae MZO-3
fig|88888881.3.peg.2362, Vibrio cholerae NRT36s
Yes VC0391   cd04258 cd04932/cd04917 1 0 0   5 Yes Yes No       absent 3 479 0.62 1.32 0.47
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio fischeri ES114 Vfis_Ab 637000334 312309 637634971 fig|312309.3.peg.338   fig|388396.7.peg.665, Vibrio fischeri MJ11
Yes VF0338   cd04258 cd04932/cd04917 1 0 0   5 Yes Yes No       absent 2 450 0.44 1.18 0.37
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio parahaemolyticus RIMD 2210633 Vpar_Ab 637000335 223926 637399733 fig|223926.1.peg.4936   fig|223926.1.peg.2716, Vibrio parahaemolyticus RIMD 2210633
Yes VP2715   cd04258 cd04932/cd04917 1 0 0   5 Yes Yes No       absent 2 450 0.44 1.23 0.36
21 α Bacteria Proteobacteria Gammaproteobacteria-lower Vibrionales Vibrionaceae Vibrio Vibrio vulnificus CMCP6 Vvul_Ac 637000336 216895 637361784 fig|216895.1.peg.1301   fig|196600.1.peg.3026, Vibrio vulnificus YJ016
Yes VV11424   cd04258 cd04932/cd04917 1 0 0   4 Yes Yes No       absent 2 449 0.44 1.27 0.35
22 α Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia muridarum Nigg Cmur_Aa 637000062 243161 637061448 fig|243161.4.peg.689   - No TC0641   cd04243   1 0 0   1 No No No       absent 6 437 1.37 0.97 1.41
22 α Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis D/UW-3/CX Ctra_Aa 637000064 272561 637004718 fig|272561.1.peg.369   fig|315277.3.peg.275, Chlamydia trachomatis A/HAR-13
No CT362   cd04243   1 0 0   1 No No No       absent 8 431 1.85 0.95 1.95
22 α Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila abortus S26/3 Cabo_Aa 637000065 218497 637382531 fig|218497.4.peg.644   - No CAB678   cd04243   1 0 0   1 No No No       absent 5 440 1.13 0.96 1.18
22 α Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila caviae GPIC Ccav_Aa 637000066 227941 637251003 fig|227941.1.peg.702   - No CCA00713   cd04243   1 0 0   1 No No No       absent 5 440 1.13 0.95 1.19
22 α Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila felis Fe/C-56 Cfel_Aa 637000067 264202 637908716 fig|264202.3.peg.303   - No CF0305   cd04243   1 0 0   1 No No No       absent 3 440 0.68 0.95 0.72
22 α Bacteria Chlamydiae Chlamydiae Chlamydiales Chlamydiaceae Chlamydophila Chlamydophila pneumoniae CWL029 Cpne_Aa 637000069 115713 637024573 fig|115713.1.peg.1030   fig|138677.1.peg.1045, Chlamydophila pneumoniae J138
fig|182082.1.peg.1086, Chlamydophila pneumoniae TW-183
fig|115711.7.peg.774, Chlamydophila pneumoniae AR39
No CPn1049   cd04243   1 0 0   1 No No No       absent 4 440 0.9 1.01 0.89
23 α Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloarcula Haloarcula marismortui ATCC 43049 Hmar_Aa 638154503 272569 638184246 fig|272569.1.peg.2429   - No rrnAC2663   cd04234   1 0 0   1 Yes No No     638184014 absent 2 391 0.51 1.14 0.45
23 α Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium sp. NRC-1 HALO-10a 638154504 64091 638160967 fig|64091.1.peg.2017   - No VNG2374G   cd04234 cd04868/cd04921 1 0 0   1 Yes No No     638161197 absent 2 394 0.5 1.1 0.45
23 α Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Haloquadratum Haloquadratum walsbyi DSM 16790 Hwal_Aa 637000129 362976 638050303 fig|362976.6.peg.5   - No HQ1005A   cd04234 cd04919/cd04923 1 0 0   1 Yes No No     638052631 absent 2 392 0.51 1.01 0.5
23 α Archaea Euryarchaeota Halobacteria Halobacteriales Halobacteriaceae Natronomonas Natronomonas pharaonis DSM 2160 Npha_Aa 637000187 348780 637720811 fig|348780.3.peg.329   - No NP0550A   cd04234   1 0 0   1 Yes No No     637720680 absent 2 394 0.5 1.05 0.48
23 α Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibact Methanobrevibacter smithii ATCC 35061 Msmi_Aa 640427121 420247 640592631 fig|420247.6.peg.811   - No Msm_0832   cd04234 cd04892/cd04921 1 0 0   1 Yes No Yes     640591937 absent 3 406 0.73 0.65 1.12
23 α Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera stadtmanae DSM 3091 Msta_Aa 637000163 339860 637845997 fig|339860.6.peg.105   - No Msp_0107   cd04234 cd04916/cd04872 1 0 0   1 Yes No Yes     637846377 absent 2 408 0.49 0.55 0.89
23 α Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobac Methanothermobacter thermautotrophicus str. Delta H Mthe-5_Aa 638154510 187420 638155329 fig|187420.1.peg.796   - No MTH802   cd04234 cd04892/cd04921 1 0 0   1 Yes No Yes 638155768   638154931 absent
24 β Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis Ames Bant_Ab 637000014 198094 637304152 fig|198094.1.peg.3608   fig|205919.3.peg.208, Bacillus anthracis str. Kruger B
fig|260799.1.peg.3611, Bacillus anthracis str. Sterne
fig|261591.3.peg.5091, Bacillus anthracis str. Vollum
fig|261594.1.peg.3914, Bacillus anthracis str. 'Ames Ancestor'
fig|280354.3.peg.1267, Bacillus anthracis str. CNEVA-9066
fig|280355.3.peg.1165, Bacillus anthracis str. A1055
fig|280477.3.peg.2625, Bacillus anthracis str. Australia 94
No BA3936   cd04260 cd04914/cd04937 1 0 0   2 Yes Yes No 637302346/637305803   637302942 absent 1 410 0.24 1.03 0.23
24 β Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus ATCC 10987 Bcer_Ab 637000016 222523 637280638 fig|222523.1.peg.3806   fig|226900.1.peg.3632, Bacillus cereus ATCC 14579
fig|288681.3.peg.1667, Bacillus cereus ZK
fig|315749.4.peg.2517, Bacillus cereus subsp. cytotoxis NVH 391-98
fig|269801.1.peg.4532, Bacillus cereus G9241
No BCE_3837   cd04260 cd04914/cd04937 1 0 0   2 Yes Yes No 637278870/637282357   637279436 absent 1 410 0.24 1.02 0.24
24 β Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus clausii KSM-K16 Bcla_Aa 637000019 66692 637620571 fig|66692.3.peg.2519   - No ABC2215   cd04260 cd04914/cd04937 1 0 0   2 Yes Yes No 637621311 637619929 637618323 absent 2 405 0.49 1.09 0.45
24 β Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus halodurans C-125 Bhal-1_Ab 637000020 272558 637059102 fig|272558.1.peg.2400   - No BH2400   cd04260 cd04914/cd04937 1 0 0   3 Yes Yes No 637060139 637057951 637058439 absent 2 411 0.48 1.13 0.42
24 β Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus licheniformis ATCC 14580 (Goettingen) Blic_Aa 639279303 279010 639311067 fig|279010.5.peg.2605   - No BLi01901   cd04260 cd04914/cd04937 1 0 0   3 Yes Yes No 639312540     absent 1 404 0.24 1.02 0.24
24 β Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus subtilis 168 Bsub_Ab 637000022 224308 637031834 fig|224308.1.peg.1679   - No BSU16760   cd04260 cd04914/cd04937 1 0 0   3 Yes Yes No 637033411     absent 1 404 0.24 1.03 0.23
24 β Bacteria Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus thuringiensis sv konkukian 97-27 Bthu_Ab 637000023 281309 637514959 fig|281309.3.peg.3759   fig|412694.5.peg.3292, Bacillus thuringiensis str. Al Hakam
No BT9727_3541   cd04260 cd04914/cd04937 1 0 0   2 Yes Yes No 637513229/637516521   637513812 absent 1 410 0.24 1 0.24
24 β Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus kaustophilus HTA426 Gkau_Aa 637000118 235909 637598051 fig|235909.3.peg.125   - No GK1276   cd04260 cd04914/cd04937 1 0 0   2 Yes Yes No 637599776     absent 3 417 0.71 1.29 0.55
24 β Bacteria Firmicutes Bacilli Bacillales Bacillaceae Geobacillus Geobacillus thermodenitrificans NG80-2 Gthe_Aa 640069312 420246 640191970 fig|420246.5.peg.1098   - No GTNG_1130   cd04260 cd04914/cd04937 1 0 0   1 Yes Yes No 640193765   640193105 absent 3 415 0.72 1.26 0.57
24 β Bacteria Firmicutes Bacilli Bacillales Bacillaceae Oceanobacillus Oceanobacillus iheyensis HTE831 Oihe_Aa 637000201 221109 637325259 fig|221109.1.peg.1613   - No OB1611   cd04260 cd04914/cd04937 1 0 0   2 Yes No No 637324081     absent 1 411 0.24 1.01 0.24
24 β Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria innocua Clip11262 Linn_Aa 637000152 272626 637224202 fig|272626.1.peg.1464   - No lin1475   cd04260 cd04914/cd04937 1 0 0   3 Yes Yes No 637225465     absent 1 403 0.24 0.94 0.26
24 β Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria monocytogenes 4b F2365 Lmon_Aa 637000154 265669 637165210 fig|265669.1.peg.1440   fig|393117.3.peg.1335, Listeria monocytogenes FSL J1-194
fig|169963.1.peg.1428, Listeria monocytogenes EGD-e
fig|267409.1.peg.737, Listeria monocytogenes str. 1/2a F6854
fig|267410.1.peg.1318, Listeria monocytogenes str. 4b H7858
fig|393123.3.peg.1107, Listeria monocytogenes FSL N1-017
fig|393124.3.peg.1068, Listeria monocytogenes FSL N3-165
fig|393125.3.peg.1764, Listeria monocytogenes FSL R2-503
fig|393128.3.peg.1233, Listeria monocytogenes F6900
fig|393130.3.peg.1179, Listeria monocytogenes J0161
fig|393131.3.peg.1189, Listeria monocytogenes J2818
fig|393133.3.peg.1363, Listeria monocytogenes 10403S
fig|401650.3.peg.1036, Listeria monocytogenes Aureli 1997
No LMOf2365_1455   cd04260 cd04914/cd04937 1 0 0   3 Yes Yes No 637166319     absent 1 403 0.24 0.92 0.26
24 β Bacteria Firmicutes Bacilli Bacillales Listeriaceae Listeria Listeria welshimeri sv 6b SLCC5334 Lwel_Aa 639633035 386043 639706342 fig|386043.6.peg.1408   - No lwe1453   cd04260 cd04914/cd04937 1 0 0   3 Yes Yes No 639707439     absent 1 403 0.24 0.92 0.26
24 β Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus plantarum WCFS1 Lpla_Aa 637000141 220668 637388264 fig|220668.1.peg.822   - No lp_0979   cd04260 cd04914/cd04937 1 0 0   2 Yes No No 637387915 637389605   absent 1 400 0.25 1.17 0.21
24 β Bacteria Firmicutes Bacilli Lactobacillales Lactobacillaceae Lactobacillus Lactobacillus salivarius salivarius UCC118 Lsal_Aa 637000143 362948 637929164 - - No LSL_1058   cd04260 cd04914/cd04937 1 0 0   1 Yes No No 637929636     absent 2 398 0.5 0.96 0.52
24 β Bacteria Firmicutes Clostridia Clostridiales unclassified Symbiobacterium Symbiobacterium thermophilum IAM 14863 Sthe-17_Aa 637000306 292459 637538069 fig|292459.1.peg.1489   - No STH1548   cd04260 cd04914/cd04937 1 0 0   2 Yes No No 637539275     absent 3 406 0.73 1.45 0.5
24 β Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium acetobutylicum ATCC 824 Cace_Aa 637000076 272562 637177472 fig|272562.1.peg.1964   - No CAC1810   cd04260 cd04914/cd04937 1 0 0   2 Yes No No 637176669     absent 1 399 0.25 0.74 0.34
24 β Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum A ATCC 3502 Cbot_Bb 640427109 413999 640574001 fig|413999.4.peg.2295   fig|441770.4.peg.2117, Clostridium botulinum A str. ATCC 19397
fig|441771.4.peg.2099, Clostridium botulinum A str. Hall
No CBO2410   cd04260 cd04914/cd04937 1 0 0   3 Yes No No 640573238 640573473   absent 1 401 0.24 0.68 0.35
24 β Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile 630 Cdif_Ab 640069308 272563 640157120 fig|1496.1.peg.3410   - No CD1322   cd04260 cd04914/cd04937 1 0 0   2 Yes No No   640156958/640157389   absent 0 407 0 0.62 0
24 β Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium novyi NT Cnov_Aa 639633021 386415 639732223 - - No NT01CX_2128   cd04260 cd04914/cd04937 1 0 0   2 Yes No No 639730992     absent 1 401 0.24 0.6 0.4
24 β Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium perfringens 13 Cper_Aa 637000079 195102 637253034 fig|195102.1.peg.1741   - No CPE1678   cd04260 cd04914/cd04937 1 0 0   1 No No No       absent 1 398 0.25 0.69 0.36
24 β Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium tetani E88 Ctet_Aa 637000080 212717 637386099 fig|212717.1.peg.1134   - No CTC01282   cd04260 cd04914/cd04937 1 0 0   2 Yes No No 637387084   637385729 absent 1 401 0.24 0.64 0.38
24 β Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Carboxydothermus Carboxydothermus hydrogenoformans Z-2901 Chyd_Ab 637000060 246194 637753902 fig|246194.3.peg.1206   - No CHY_1155   cd04260 cd04914/cd04937 1 0 0   2 Yes No No 637754652     absent 1 410 0.24 0.85 0.28
24 β Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Desulfotomaculum Desulfotomaculum reducens MI-1 Dred_Aa 640069310 349161 640181108 fig|349161.4.peg.1907   - No Dred_1940   cd04260 cd04914/cd04937 1 0 0   2 Yes No No 640180334     absent 1 408 0.24 0.94 0.26
24 β Bacteria Firmicutes Clostridia Clostridiales Peptococcaceae Pelotomaculum Pelotomaculum thermopropionicum SI Pthe_Ab 640427128 370438 640527253 - - No PTH_1287   cd04260 cd04914/cd04937 1 0 0   2 Yes No No 640527573     absent 3 414 0.72 0.98 0.73
24 β Bacteria Firmicutes Clostridia Thermoanaerobacter Thermoanaerobacteriace Moorella Moorella thermoacetica ATCC 39073 Mthe-3_Ab 637000167 264732 637828995 fig|264732.9.peg.1050   - No Moth_1067   cd04260 cd04914/cd04937 1 0 0   2 Yes No No 637829243     absent 2 413 0.48 1.13 0.42
24 β Bacteria Firmicutes Clostridia Thermoanaerobacter Thermoanaerobacteriace Thermoanaerobact Thermoanaerobacter tengcongensis MB4 Tten_Aa 637000318 273068 637262918 fig|273068.3.peg.1347   - No TTE1382   cd04260 cd04914/cd04937 1 0 0   1 Yes No No 637264088 637263645   absent 0 398 0 0.8 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Acidothermaceae Acidothermus Acidothermus cellulolyticus 11B Acel_Aa 639633001 351607 639730806 fig|351607.5.peg.2008   - No Acel_2012   cd04261 cd04913/cd04936 0 1 0   1 Yes No No 639729398     MEA 1 422 0.23 1.38 0.17
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Micrococcaceae Arthrobacter Arthrobacter sp. FB24 ARTH-1a 639633006 290399 639688349 - - No Arth_0552   cd04261 cd04913/cd04936 1 0 0   1 Yes No No 639690442   639691384 LEQ 1 452 0.22 1.45 0.15
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium diphtheriae NCTC 13129 Cdip_Aa 637000082 257309 637117498 fig|257309.1.peg.256   - No DIP0277   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 637118245     VEE 1 421 0.23 1.4 0.16
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium efficiens YS-314 Ceff_Aa 637000083 196164 637351074 fig|196164.1.peg.220   - No CE0220   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 637352158     MEE 1 428 0.23 1.45 0.16
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium glutamicum ATCC 13032 (Kitasato) Cglu_Aa 639279307 196627 639301219 fig|196627.4.peg.286   - No NCgl0247   cd04261 cd04913/cd04936 0 1 0 2dtj 1 Yes Yes No 639315697/639302125     VEE 1 421 0.23 1.4 0.16
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Corynebacterium Corynebacterium jeikeium K411 Cjei_Aa 637000085 306537 637665819 fig|306537.3.peg.766   - No jk1998   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 637665163     MEE 1 421 0.23 1.41 0.16
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Microbacteriaceae Clavibacter Clavibacter michiganensis michiganensis NCPPB 382 Cmic_Aa 640427108 443906 640540204 fig|443906.9.peg.952   - No CMM_0902   cd04261 cd04913/cd04936 1 0 0   1 Yes No No 640540464     VEE 0 421 0 1.38 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Frankiaceae Frankia Frankia alni ACN14a Faln_Ab 637000115 326424 638097357 - - No FRAAL0605   cd04261 cd04913/cd04936 1 0 0   2 Yes No No 638102598     VEQ 1 422 0.23 1.41 0.16
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Frankiaceae Frankia Frankia sp. CcI3 FRAN-2b 637000116 106370 637877590 fig|106370.11.peg.255   fig|298653.4.peg.6441, Frankia sp. EAN1pec
No Francci3_0262   cd04261 cd04913/cd04936 1 0 0   2 Yes No No 637881051     VEQ 1 422 0.23 1.44 0.16
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Microbacteriaceae Leifsonia Leifsonia xyli xyli CTCB07 Lxyl_Aa 637000149 281090 637525335 fig|281090.3.peg.1388   - No Lxx03450   cd04261 cd04913/cd04936 1 0 0   1 Yes No No 637525599     VEE 0 428 0 1.34 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Mycobacterium Mycobacterium avium paratuberculosis K-10 Mavi_Ba 637000168 262316 637133255 fig|262316.1.peg.311   - No MAP0311c   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 637135439     MED 0 421 0 1.48 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Mycobacterium Mycobacterium bovis AF2122/97 Mbov_Aa 637000169 233413 637141082 fig|233413.1.peg.3704   fig|410289.13.peg.3731, Mycobacterium bovis BCG str. Pasteur 1173P2
No Mb3736c   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 637138663     MED 0 421 0 1.46 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium gilvum PYR-GCK Mgil_Aa 640427122 350054 640455506 - - No Mflv_1304   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 640456508     MED 0 440 0 1.52 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Mycobacterium Mycobacterium leprae TN Mlep_Aa 637000170 272631 637073099 fig|272631.1.peg.1383   - No ML2323   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 637072381     MED 0 421 0 1.38 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Mycobacterium Mycobacterium smegmatis MC2 155 Msme_Aa 639633041 246196 639744668 fig|246196.1.peg.6218   - No MSMEG_6257   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 639743389     MED 0 421 0 1.47 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Mycobacterium Mycobacterium tuberculosis CDC1551 Mtub_Aa 637000172 83331 637098263 fig|83331.1.peg.3957   fig|336982.3.peg.3929, Mycobacterium tuberculosis F11
fig|419947.3.peg.3736, Mycobacterium tuberculosis H37Ra
fig|83332.1.peg.3712, Mycobacterium tuberculosis H37Rv
No MT3812   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 637095655     MED 0 421 0 1.48 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium ulcerans Agy99 Mulc_Aa 639633043 362242 639762273 - - No MUL_4297   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 639761992     MED 0 421 0 1.47 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium vanbaalenii PYR-1 Mvan_Aa 639633044 350058 639808976 fig|350058.5.peg.5419   - No Mvan_5504   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 639807819     MED 0 421 0 1.5 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Mycobacteriaceae Mycobacterium Mycobacterium sp. JLS MYCO-4a 640069320 164757 640142568 fig|164757.7.peg.5207   fig|164756.6.peg.4659, Mycobacterium sp. MCS
No Mjls_5257   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 640141194     MED 0 421 0 1.51 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Nocardia Nocardia farcinica IFM 10152 Nfar_Aa 637000198 247156 637572834 fig|247156.1.peg.389   - No nfa3180   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 637573580     LEK 0 421 0 1.46 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Nocardioidaceae Nocardioides Nocardioides sp. JS614 NOCA-3a 639633046 196162 639774935 fig|196162.6.peg.546   - No Noca_0321   cd04261 cd04913/cd04936 0 1 0   1 Yes No No 639776344     MEQ 1 424 0.23 1.52 0.15
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Propionibacteriaceae Propionibacteriu Propionibacterium acnes KPA171202 Pacn_Aa 637000215 267747 637522885 fig|267747.1.peg.2090   - No PPA2148   cd04261 cd04913/cd04936 1 0 0   1 Yes No No 637522007     MEE 1 424 0.23 1.63 0.14
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Corynebacteriaceae Rhodococcus Rhodococcus sp. RHA1 RHOD-5a 637000234 101510 638090873 - - No RHA1_ro04291   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 638088075     VEE 0 421 0 1.44 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Streptomycetaceae Streptomyces Streptomyces avermitilis MA-4680 Save_Aa 637000304 227882 637207698 fig|227882.1.peg.4562   - No SAV4559   cd04261 cd04913/cd04936 0 1 0   1 Yes No No 637206027     VEQ 2 430 0.46 1.54 0.3
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Streptomycetaceae Streptomyces Streptomyces coelicolor A3(2) Scoe_Aa 637000305 100226 637267867 fig|100226.1.peg.3572   - No SCO3615   cd04261 cd04913/cd04936 0 1 0   1 Yes No No 637269630   637264648 VEQ 2 425 0.47 1.52 0.31
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Pseudonocardiaceae Saccharopolyspor Saccharopolyspora erythraea NRRL 2338 Sery_Aa 640069329 405948 640171032 - - No SACE_0282   cd04261 cd04913/cd04936 0 1 0   1 Yes Yes No 640176912   640172972 VEQ 0 421 0 1.52 0
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Streptomycetaceae Streptomyces Streptomyces griseus subsp. griseus NBRC 13350 Sgri_Aa 641522653 455632 641697696 - - No SGR_3372   cd04261 cd04913/cd04936 0 1 0   2 Yes No No 641696496     VEH 2 423 0.47 1.46 0.32
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Micromonosporaceae Salinispora Salinispora tropica CNB-440 Stro_Aa 640427140 369723 640472498 fig|369723.3.peg.226   - No Strop_0226   cd04261 cd04913/cd04936 0 1 0   1 Yes No No 640475906     VEQ 1 421 0.23 1.55 0.15
25 β Bacteria Actinobacteria Actinobacteridae Actinomycetales Nocardiopsaceae Thermobifida Thermobifida fusca YX Tfus_Aa 637000319 269800 637683723 fig|269800.4.peg.70   - No Tfu_0043   cd04261 cd04913/cd04936 0 1 0   1 Yes No No 637686139     MEQ 1 423 0.23 1.5 0.15
26 β Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga maritima MSB8 Tmar_Ab 637000321 243274 637005837 fig|243274.1.peg.541   - No TM0547 Hdh/Ask cd04261 cd04913/cd04936 1 0 0   2 Yes No No       VEN 2 415 0.48 1.09 0.44
26 β Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga petrophila RKU-1 Tpet_Ab 640427150 390874 640562876 fig|390874.10.peg.374   - No Tpet_0373 Hdh/Ask cd04261 cd04913/cd04936 1 0 0   2 Yes No No       VEN 2 415 0.48 1.09 0.44
27 β Bacteria Proteobacteria Deltaproteobacteria Bdellovibrionales Bdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus HD100 Bbac_Aa 637000030 264462 637481199 fig|264462.1.peg.481   - No Bd0528   cd04261   0 1 0   2 No No No       MFE 1 395 0.25 1.2 0.21
27 β Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcacea Anaeromyxobacter Anaeromyxobacter dehalogenans 2CP-C Adeh_Aa 637000007 290397 637865144 fig|290397.13.peg.3577   - No Adeh_3589   cd04261   0 1 0   2 Yes No No 637863174 637862929 637865489 VVK 1 387 0.25 1.28 0.2
27 β Bacteria Proteobacteria Deltaproteobacteria Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus DK 1622 Mxan_Aa 637000186 246197 638026217 fig|246197.19.peg.4360   - No MXAN_4877   cd04246   0 1 0   4 Yes No No       VLS 3 397 0.75 1.36 0.55
28 β Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium botulinum A ATCC 3502 Cbot_Ba 640427109 413999 640574950 fig|413999.4.peg.3200   fig|441770.4.peg.3162, Clostridium botulinum A str. ATCC 19397
fig|441771.4.peg.3044, Clostridium botulinum A str. Hall
No CBO3337   cd04261 cd04913/cd04936 0 1 0   3 Yes No No 640573238 640573473   MNM 0 400 0 0.68 0
28 β Bacteria Firmicutes Clostridia Clostridiales Clostridiaceae Clostridium Clostridium difficile 630 Cdif_Aa 640069308 272563 640157892 fig|1496.1.peg.2725   - No CD2054   cd04261 cd04913/cd04936 0 1 0   2 Yes No No   640156958/640157389   MKL 0 397 0 0.62 0
29 β Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga maritima MSB8 Tmar_Aa 637000321 243274 637006812 fig|243274.1.peg.1502   - No TM1518   cd04261 cd04891/cd04936 0 1 0   2 Yes No No       MVV 2 401 0.49 1.09 0.45
29 β Bacteria Thermotogae Thermotogae (class) Thermotogales Thermotogaceae Thermotoga Thermotoga petrophila RKU-1 Tpet_Aa 640427150 390874 640563799 fig|390874.10.peg.1284   - No Tpet_1274   cd04261 cd04891/cd04936 0 1 0   2 Yes No No       MVV 3 401 0.74 1.09 0.68
30 β Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus aureus COL Saur_Aa 637000273 93062 637152180 fig|93062.4.peg.1609   fig|93061.3.peg.1313, Staphylococcus aureus subsp. aureus NCTC 8325
fig|158878.1.peg.1393, Staphylococcus aureus subsp. aureus Mu50
fig|158879.1.peg.1268, Staphylococcus aureus subsp. aureus N315
fig|196620.1.peg.1281, Staphylococcus aureus subsp. aureus MW2
fig|282458.1.peg.1325, Staphylococcus aureus subsp. aureus MRSA252
fig|282459.1.peg.1322, Staphylococcus aureus subsp. aureus MSSA476
fig|359786.3.peg.470, Staphylococcus aureus subsp. aureus JH9
fig|359787.3.peg.1262, Staphylococcus aureus subsp. aureus JH1
fig|367830.3.peg.1350, Staphylococcus aureus subsp. aureus USA300
fig|418127.4.peg.1283, Staphylococcus aureus subsp. aureus Mu3
fig|426430.6.peg.1265, Staphylococcus aureus subsp. aureus str. Newman
No SACOL1428   cd04261 cd04891/cd04923 1 0 0   2 Yes Yes No   637152115   MSN 1 401 0.24 0.74 0.32
30 β Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis RP62A Sepi_Aa 637000282 176279 637167618 fig|176279.3.peg.1042   fig|176280.1.peg.2503, Staphylococcus epidermidis ATCC 12228
No SERP0963   cd04261 cd04891/cd04923 1 0 0   2 Yes Yes No   637167553   MSK 1 400 0.25 0.72 0.35
30 β Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus haemolyticus JCSC1435 Shae_Aa 637000283 279808 637667503 fig|279808.3.peg.2248   - No SH1518   cd04261 cd04891/cd04923 1 0 0   2 Yes Yes No   637667564   MSR 1 400 0.25 0.77 0.32
30 β Bacteria Firmicutes Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus saprophyticus saprophyticus ATCC 15305 Ssap_Aa 637000284 342451 637696748 fig|342451.4.peg.694   - No SSP1357   cd04261 cd04891/cd04923 1 0 0   2 Yes Yes No   637696829   MPQ 1 402 0.24 0.77 0.31
31 β Bacteria Spirochaetes Spirochaetes (class) Spirochaetales Leptospiraceae Leptospira Leptospira borgpetersenii sv Hardjo-bovis JB197 Lbor_Ba 639633032 355277