Origin IGS: gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca .........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9.........1.........2.........3.........4.........5.........6.........7.........8.........9 tgactatcctgaaaataatcattagccattcataattatgtcgggctttcagccctccgccgaggagattgcctttttcccaacgcttcgctacgcattgggctgaattaatacgccctttcagggctgttgaagcattcagctatcaactgtcagcattcagccaaaaatcagcaacttaacagctcaacgcccgcaaggggcacaaaggctgaaagtccgatctatttcagccccatcccataaggttggggtatcgatgcccataccttgttttaataagcattcagccatcagccaacaaacacctcaacaattcaacacctcaatgcccgcagggcttcacgtttcactcttcgtttttcgtttttcacttttcactaatatagattcgtaaccgtcggtcttttcagagtagaaaagagataggggaaaagcccggaaagccataaaaaataatatctttgtactcggattttacgcgaaaac Mask Tandem Repeat Region ================================================ gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca Find is-nt database================================================ Query_seq: TF2477:TF2478|TF2477:TF2478:phosphatase:hypothetical protein:->->:2655026..2655514 489 gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find is-aa database================================================ Query_seq: TF2477:TF2478|TF2477:TF2478:phosphatase:hypothetical protein:->->:2655026..2655514 489 gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 Find nr database================================================ Query_seq: TF2477:TF2478|TF2477:TF2478:phosphatase:hypothetical protein:->->:2655026..2655514 489 gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca Intra-Species Hit: Count: 0 Inter-species Hit: Count: 0 gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca Predict ORF larger than 30AA ================================================ Protein_Len: 31 Strand: + Start: 14 End: 106 ............. M R V Q R Y Y F L W L S G L F P Y L F S T L K R P T V T N L Y ............................................................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 39 Strand: + Start: 28 End: 144 ........................... M L F F M A F R A F P L S L F Y S E K T D G Y E S I L V K S E K R K T K S E T ......................................................................................................................................................................................................................................................................................................................................................... Protein_Len: 36 Strand: + Start: 193 End: 300 ................................................................................................................................................................................................ M M A E C L L K Q G M G I D T P T L W D G A E I D R T F S L C A P C G R ............................................................................................................................................................................................. Protein_Len: 47 Strand: + Start: 348 End: 488 ........................................................................................................................................................................................................................................................................................................................................................... M N A S T A L K G R I N S A Q C V A K R W E K G N L L G G G L K A R H N Y E W L M I I F R I V . Protein_Len: 37 Strand: - Start: 311 End: 421 ...................................................................................................................................................................................................................................................................................................................... T A S K Q S F A S L Q Y S F A E V A R F P R I L E A W H T A F R Q S F P M .................................................................... Protein_Len: 39 Strand: - Start: 247 End: 363 ...................................................................................................................................................................................................................................................... P I P S F Y I P S E A K T G R A P T S S N L Q Q N K A S H Q C N I A S H K L M .............................................................................................................................. Protein_Len: 48 Strand: - Start: 104 End: 247 ....................................................................................................... I L S F H F V F F S S H F T F G Q P C Q P T S N N L H K N A S P Q I S I L V L Y P C R Y G L R M .................................................................................................................................................................................................................................................. Protein_Len: 60 Strand: - Start: 96 End: 353 ............................................................................................... Q Q P T Q Q S I A S H K N F C P I P M S V G V K H S P A S I S R V K L R Q A G Q P R Q A T L N S I K P Q I S V T S L Q M ........................................................................................................................................ gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca Predict Promoter with matrix: RpoD-15 score > 80================================================ Predict Promoter with matrix: RpoD-16 score > 80================================================ Predict Promoter with matrix: RpoD-17 score > 80================================================ Predict Promoter with matrix: RpoD-18 score > 80================================================ Predict Promoter with matrix: RpoD-19 score > 80================================================ Predict Promoter with matrix: RpoN score > 80================================================ gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca Predict TransTerm conf > 70================================================ TransTerm Strand: + Conf: 61 HP_score: -4.8 Tail_Score: -3.89614 Start: 255 End: 280 Full_Region: AACCTTATGGGATGG GGCTGAAA TAGATCGGAC TTTCAGCC TTTGTGCCCCTTGCG ..............................................................................................................................................................................................................................................................GGCTGAAATAGATCGGACTTTCAGCC................................................................................................................................................................................................................. Find igs database================================================ Query_seq: TF2477:TF2478|TF2477:TF2478:phosphatase:hypothetical protein:->->:2655026..2655514 489 gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca Intra-Species Hit: Count: 9 Min: 1 Max: 489 Len: 489 Subject: tfor_TF2477_TF2478|phosphatase:hypothetical protein|POSITIVE:POSITIVE|[2655026,2655514]|489 HSP 1 e-value: 0.0 bit: 969.0 Len: 489 Query Start:1 Query End:489 Subject Strand: POSITIVE Subject Start: 1 Subject End: 489 gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca gttttcgcgtaaaatccgagtacaaagatattattttttatggctttccgggcttttcccctatctcttttctactctgaaaagaccgacggttacgaatctatattagtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttgaggtgtttgttggctgatggctgaatgcttattaaaacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgttaagttgctgatttttggctgaatgctgacagttgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaaaaggcaatctcctcggcggagggctgaaagcccgacataattatgaatggctaatgattattttcaggatagtca Subject: tfor_TF2815_TF2816|meso-diaminopimelate D-dehydrogenase:hypothetical protein|POSITIVE:POSITIVE|[3006481,3007064]|584 HSP 1 e-value: 3.0E-16 bit: 87.7 Len: 84 Query Start:215 Query End:298 Subject Strand: NEGATIVE Subject Start: 378 Subject End: 461 ......................................................................................................................................................................................................................aacaaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggc............................................................................................................................................................................................... ......................................................................................................................................................................................................................aacaaggtctgggaatcgatatcccacccttacgggatggggctgaaatatatcgggctttcagcccttgtgccctgtgcgggc............................................................................................................................................................................................... HSP 2 e-value: 2.0E-11 bit: 71.9 Len: 60 Query Start:347 Query End:406 Subject Strand: NEGATIVE Subject Start: 246 Subject End: 305 ..........................................................................................................................................................................................................................................................................................................................................................gctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcg................................................................................... ..........................................................................................................................................................................................................................................................................................................................................................gctgactgctttaaaagccctgaaagggcgcattaattcagcccaatgtggagcgaagcg................................................................................... Subject: tfor_TF2920_TF2921|conserved hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[3117231,3118637]|1407 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 45 Query Start:362 Query End:406 Subject Strand: NEGATIVE Subject Start: 883 Subject End: 927 .........................................................................................................................................................................................................................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgcgtagcgaagcg................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgcgcagcgaagcg................................................................................... HSP 2 e-value: 3.0E-10 bit: 67.9 Len: 88 Query Start:359 Query End:446 Subject Strand: NEGATIVE Subject Start: 514 Subject End: 607 ......................................................................................................................................................................................................................................................................................................................................................................aacagccctgaaagggcgtattaattcagcccaatg-----cgtagcgaagcgttgggaaaaagg-caatctcctcggcggagggctgaaagcc........................................... ......................................................................................................................................................................................................................................................................................................................................................................aacagccctgaaagggcgcgttaattcagtccaatgtgcagcgaagcgaagcgttgggaaacagggcgaccccctcggcggagggctgaaagcc........................................... HSP 3 e-value: 5.0E-9 bit: 63.9 Len: 52 Query Start:229 Query End:280 Subject Strand: NEGATIVE Subject Start: 1028 Subject End: 1079 ....................................................................................................................................................................................................................................atcgataccccaaccttatgggatggggctgaaatagatcggactttcagcc................................................................................................................................................................................................................. ....................................................................................................................................................................................................................................atcgataccccatccttacgggatggggctgaaatataccgggctttcagcc................................................................................................................................................................................................................. Subject: tfor_TF1585_TF1586|hypothetical protein:hypothetical protein|POSITIVE:POSITIVE|[1690671,1691110]|440 HSP 1 e-value: 2.0E-14 bit: 81.8 Len: 88 Query Start:359 Query End:446 Subject Strand: NEGATIVE Subject Start: 11 Subject End: 94 ......................................................................................................................................................................................................................................................................................................................................................................aacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcgttgggaaa-aaggcaatctcctcggcggagggctgaaagcc........................................... ......................................................................................................................................................................................................................................................................................................................................................................aacagccctgaaagggcgtgttaattcagcccaat-----gcaaagcgttgggaaacaaggcaaccccctcagcggagggctgaaagcc........................................... HSP 2 e-value: 8.0E-14 bit: 79.8 Len: 76 Query Start:220 Query End:295 Subject Strand: NEGATIVE Subject Start: 186 Subject End: 261 ...........................................................................................................................................................................................................................ggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcg.................................................................................................................................................................................................. ...........................................................................................................................................................................................................................ggtatgggaatcgataccccacccttgcgggatggggctgaaatatatcgggcttgcagcccttgtgccccgtgcg.................................................................................................................................................................................................. Subject: tfor_TF0029_TF0030|hypothetical protein:N-acetylneuraminate lyase|POSITIVE:POSITIVE|[25123,25909]|787 HSP 1 e-value: 5.0E-12 bit: 73.8 Len: 93 Query Start:217 Query End:309 Subject Strand: POSITIVE Subject Start: 194 Subject End: 286 ........................................................................................................................................................................................................................caaggtatgggcatcgataccccaaccttatgggatggggctgaaatagatcggactttcagcctttgtgccccttgcgggcgttgagctgtt.................................................................................................................................................................................... ........................................................................................................................................................................................................................caaggtatgggcatggatcccccacccttacgggatggggctgaaataattcgggcttccagcccttgtatgccctgcgggcgttgagttgtt.................................................................................................................................................................................... HSP 2 e-value: 5.0E-9 bit: 63.9 Len: 60 Query Start:342 Query End:401 Subject Strand: POSITIVE Subject Start: 366 Subject End: 425 .....................................................................................................................................................................................................................................................................................................................................................tgatagctgaatgcttcaacagccctgaaagggcgtattaattcagcccaatgcgtagcg........................................................................................ .....................................................................................................................................................................................................................................................................................................................................................tgatagctgactgctgtaaaagccctgaaagggcataataattcagcccaatgcgaagcg........................................................................................ Subject: tfor_TF0018_TF0019|hypothetical protein:heat shock protein ClpB|POSITIVE:POSITIVE|[12152,12589]|438 HSP 1 e-value: 2.0E-11 bit: 71.9 Len: 48 Query Start:359 Query End:406 Subject Strand: NEGATIVE Subject Start: 89 Subject End: 136 ......................................................................................................................................................................................................................................................................................................................................................................aacagccctgaaagggcgtattaattcagcccaatgcgtagcgaagcg................................................................................... ......................................................................................................................................................................................................................................................................................................................................................................aacagccctgaaagggcgcattaattcagcccaatgtggagcgaagcg................................................................................... HSP 2 e-value: 1.0E-6 bit: 56.0 Len: 28 Query Start:161 Query End:188 Subject Strand: NEGATIVE Subject Start: 148 Subject End: 175 ................................................................................................................................................................ttgaggtgttgaattgttgaggtgtttg............................................................................................................................................................................................................................................................................................................. ................................................................................................................................................................ttgaggtgttgaattgttgaggtgtttg............................................................................................................................................................................................................................................................................................................. Subject: tfor_TF1588_TF1589|hypothetical protein:surface antigen BspA|POSITIVE:POSITIVE|[1702621,1703328]|708 HSP 1 e-value: 5.0E-9 bit: 63.9 Len: 40 Query Start:362 Query End:401 Subject Strand: NEGATIVE Subject Start: 340 Subject End: 379 .........................................................................................................................................................................................................................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgcgtagcg........................................................................................ .........................................................................................................................................................................................................................................................................................................................................................................agccctgaaagggcgtgttaattcagcccaatgcgcagcg........................................................................................ HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 41 Query Start:108 Query End:148 Subject Strand: NEGATIVE Subject Start: 656 Subject End: 696 ...........................................................................................................agtgaaaagtgaaaaacgaaaaacgaagagtgaaacgtgaa..................................................................................................................................................................................................................................................................................................................................................... ...........................................................................................................agtgaaaagtgaaaaacgaaaagtgaagagtgaaaagtgaa..................................................................................................................................................................................................................................................................................................................................................... Subject: tfor_TF1762_TF1763|hypothetical protein:K+-dependent Na+/Ca+ exchanger related-protein|POSITIVE:POSITIVE|[1899709,1900545]|837 HSP 1 e-value: 3.0E-7 bit: 58.0 Len: 45 Query Start:362 Query End:406 Subject Strand: NEGATIVE Subject Start: 64 Subject End: 108 .........................................................................................................................................................................................................................................................................................................................................................................agccctgaaagggcgtattaattcagcccaatgcgtagcgaagcg................................................................................... .........................................................................................................................................................................................................................................................................................................................................................................agccctgaaagggcgcgttaattcagcccaatgtgcagcgaagcg................................................................................... HSP 2 e-value: 3.0E-7 bit: 58.0 Len: 53 Query Start:228 Query End:280 Subject Strand: NEGATIVE Subject Start: 234 Subject End: 286 ...................................................................................................................................................................................................................................catcgataccccaaccttatgggatggggctgaaatagatcggactttcagcc................................................................................................................................................................................................................. ...................................................................................................................................................................................................................................catcgataccccacccttgcgggatggggctgaaatatgtcgggctttcagcc................................................................................................................................................................................................................. Subject: tfor_TF0358_TF0359|hypothetical protein:conserved hypothetical protein|POSITIVE:POSITIVE|[376365,377082]|718 HSP 1 e-value: 5.0E-6 bit: 54.0 Len: 47 Query Start:234 Query End:280 Subject Strand: NEGATIVE Subject Start: 531 Subject End: 577 .........................................................................................................................................................................................................................................taccccaaccttatgggatggggctgaaatagatcggactttcagcc................................................................................................................................................................................................................. .........................................................................................................................................................................................................................................taccccacccttgcgggatggggctgaaatagaacgggctttcagcc................................................................................................................................................................................................................. HSP 2 e-value: 5.0E-6 bit: 54.0 Len: 55 Query Start:125 Query End:179 Subject Strand: NEGATIVE Subject Start: 654 Subject End: 708 ............................................................................................................................gaaaaacgaagagtgaaacgtgaagccctgcgggcattgaggtgttgaattgttg...................................................................................................................................................................................................................................................................................................................... ............................................................................................................................gaaaaacgaaaagtgaaaagtgatgctcttcgggcgttgagttgttgaattgttg...................................................................................................................................................................................................................................................................................................................... Inter-species Hit: Count: 0 Predict Forward Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ GUUUUCGCGUAAAAUCCGAGUACAAAGAUAUUAUUUUUUAUGGCUUUCCGGGCUUUUCCCCUAUCUCUUUUCUACUCUGAAAAGACCGACGGUUACGAAUCUAUAUUAGUGAAAAGUGAAAAACGAAAAACGAAGAGUGAAACGUGAAGCCCUGCGGGCAUUGAGGUGUUGAAUUGUUGAGGUGUUUGUUGGCUGAUGGCUGAAUGCUUAUUAAAACAAGGUAUGGGCAUCGAUACCCCAACCUUAUGGGAUGGGGCUGAAAUAGAUCGGACUUUCAGCCUUUGUGCCCCUUGCGGGCGUUGAGCUGUUAAGUUGCUGAUUUUUGGCUGAAUGCUGACAGUUGAUAGCUGAAUGCUUCAACAGCCCUGAAAGGGCGUAUUAAUUCAGCCCAAUGCGUAGCGAAGCGUUGGGAAAAAGGCAAUCUCCUCGGCGGAGGGCUGAAAGCCCGACAUAAUUAUGAAUGGCUAAUGAUUAUUUUCAGGAUAGUCA ...(((((.......(((.....(((((......)))))..(((((..((.(((((((.......(((((((......)))))))....((.((((...((.........))...))))....))......)))))))....))..)))))...)))((((((.(((..((((((((((((((((((......((((((((.(((((((........(((((.((((.........)))))))))..(((..((((((((((..........))))))))))....))).....))))))).)))))))).((((..((((.(..((.....))..).))))..)))).)))))))))))).((((.....)))).....)))))))))))))))...)))))..((((((.....(((...((((.....)))).))).....))))))...........((((((.(((......)))...)))))) (-151.60) Predict Reverse Strand Minimun Free Energy by RNAFold (ViennaRNA) ================================================ UGACUAUCCUGAAAAUAAUCAUUAGCCAUUCAUAAUUAUGUCGGGCUUUCAGCCCUCCGCCGAGGAGAUUGCCUUUUUCCCAACGCUUCGCUACGCAUUGGGCUGAAUUAAUACGCCCUUUCAGGGCUGUUGAAGCAUUCAGCUAUCAACUGUCAGCAUUCAGCCAAAAAUCAGCAACUUAACAGCUCAACGCCCGCAAGGGGCACAAAGGCUGAAAGUCCGAUCUAUUUCAGCCCCAUCCCAUAAGGUUGGGGUAUCGAUGCCCAUACCUUGUUUUAAUAAGCAUUCAGCCAUCAGCCAACAAACACCUCAACAAUUCAACACCUCAAUGCCCGCAGGGCUUCACGUUUCACUCUUCGUUUUUCGUUUUUCACUUUUCACUAAUAUAGAUUCGUAACCGUCGGUCUUUUCAGAGUAGAAAAGAGAUAGGGGAAAAGCCCGGAAAGCCAUAAAAAAUAAUAUCUUUGUACUCGGAUUUUACGCGAAAAC ((.((.(((.((((......................((.(((((((((((((((....((.(..(((.((((........(((.((........)).)))((((((((......((((.....)))).((((((((.....))).))))).......))))))))........)))))))..).)).....((((.....)))).....))))))))))))))).)).....((((((.((.....)).))))))...((.((((......(((((....)))))....((.....)).......................................)))).))...)))).......(((((((.(((.((.(((((((((.....((((.((.......))))))......))).)))))).)).))).)))))))..))).)).)).......(((.((((........)))).)))......... (-124.20) Find mRNA Target Using Conserved IGS================================================ 5'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 899 406 361 227 182 tfor:TF0468|5end_hypothetical_protein_486929..487159_POSITIVE 838 406 362 227 183 tfor:TF2439|5end_conserved_hypothetical_protein_2616380..2616610_POSITIVE 766 410 362 208 165 tfor:TF0346|5end_hypothetical_protein_367048..367278_POSITIVE 766 410 362 208 165 tfor:TF0340|5end_hypothetical_protein_363893..364123_POSITIVE 759 450 401 90 39 tfor:TF2640|5end_hypothetical_protein_2809106..2809336_POSITIVE 758 418 372 226 175 tfor:TF2171|5end_hypothetical_protein_2345485..2345715_POSITIVE 758 280 231 109 60 tfor:TF1516|5end_transposase_fragment_1626407..1626637_POSITIVE 752 298 251 58 11 tfor:TF2665|5end_hypothetical_protein_2841973..2842203_POSITIVE 752 410 362 230 187 tfor:TF2351|5end_acetate_kinase_2515480..2515710_POSITIVE 743 420 372 219 175 tfor:TF2166|5end_hypothetical_protein_2342115..2342345_POSITIVE 739 280 231 230 181 tfor:TF3082|5end_conserved_hypothetical_protein_3316431..3316661_POSITIVE 739 280 231 109 60 tfor:TF2202|5end_hypothetical_protein_2378682..2378912_POSITIVE 738 410 362 183 140 tfor:TF2641|5end_riboflavin_kinase/FAD_synthase_2809681..2809911_POSITIVE 736 450 401 161 110 tfor:TF1274|5end_hypothetical_protein_1357621..1357851_POSITIVE 729 410 362 224 171 tfor:TF2172|5end_hypothetical_protein_2345822..2346052_POSITIVE 729 410 362 218 165 tfor:TF2173|5end_hypothetical_protein_2345816..2346046_POSITIVE 726 401 362 228 189 tfor:TF1175|5end_membrane-fusion_protein_1258140..1258370_POSITIVE 690 440 394 51 3 tfor:TF3003|5end_hypothetical_protein_3220382..3220612_POSITIVE 686 280 231 223 174 tfor:TF1275|5end_transcription-repair_coupling_factor_1357866..1358096_POSITIVE 662 280 231 109 60 tfor:TF0370|5end_hypothetical_protein_386028..386258_POSITIVE 3'END mRNA Target Prediction=================================== Score srna_start srna_end target_start tegart_end seq_id 862 449 401 83 32 tfor:TF1585|3end_hypothetical_protein_1690610..1690760_POSITIVE 862 449 401 76 25 tfor:TF1584|3end_hypothetical_protein_1690603..1690753_POSITIVE 837 440 391 62 10 tfor:TF2922|3end_surface_antigen_BspA_3121538..3121688_POSITIVE 832 405 362 151 108 tfor:TF1588|3end_hypothetical_protein_1702560..1702710_POSITIVE 828 450 401 81 27 tfor:TF1762|3end_hypothetical_protein_1899648..1899798_POSITIVE 828 450 401 54 2 tfor:TF0018|3end_hypothetical_protein_12091..12241_POSITIVE 767 410 362 120 77 tfor:TF1592|3end_hypothetical_protein_1708557..1708707_POSITIVE 763 400 351 115 66 tfor:TF1590|3end_hypothetical_protein_1706043..1706193_POSITIVE 758 410 362 55 2 tfor:TF0958|3end_conserved_hypothetical_protein_1004909..1005059_POSITIVE 747 410 363 43 1 tfor:TF0344|3end_hypothetical_protein_366963..367113_POSITIVE 735 410 361 113 69 tfor:TF2025|3end_hypothetical_protein_2182180..2182330_POSITIVE 729 410 362 114 61 tfor:TF2171|3end_hypothetical_protein_2345792..2345942_POSITIVE 660 280 231 73 24 tfor:TF2172|3end_hypothetical_protein_2346135..2346285_POSITIVE 642 420 372 44 1 tfor:TF2350|3end_hypothetical_protein_2515364..2515514_POSITIVE 639 280 236 45 1 tfor:TF3003|3end_hypothetical_protein_3220629..3220779_POSITIVE 629 270 221 111 60 tfor:TF0340|3end_hypothetical_protein_364257..364407_POSITIVE 579 449 404 48 1 tfor:TF2169|3end_hypothetical_protein_2345354..2345504_POSITIVE 579 449 408 41 1 tfor:TF0343|3end_hypothetical_protein_366923..367073_POSITIVE 568 180 132 79 31 tfor:TF1170|3end_conserved_hypothetical_protein_1252799..1252949_POSITIVE 537 259 215 151 107 tfor:TF1274|3end_hypothetical_protein_1357895..1358045_POSITIVE